SecReT4
T4SS ID495
StrainRickettsia conorii str. Malish 7
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_003103
Location131791..149026; 251552..251911; 385301..393204; 1117534..1119966
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_003103
Region 1: 131791..149026
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RC0132126803..127030 [-], 22815892055hypothetical protein 
2RC0133127305..127601 [-], 29715892056hypothetical protein 
3RC0134127873..128370 [-], 49815892057hypothetical protein 
4RC0135128370..128753 [-], 38415892058hypothetical protein 
5RC0136 (rpmB)129131..129424 [+], 2941589205950S ribosomal protein L28 
6RC0137 (rpmE)129421..129657 [+], 2371589206050S ribosomal protein L31 
7RC0138 (engB)130197..130907 [+], 71115892061ribosome biogenesis GTP-binding protein YsxC 
8RC0139 (argB)130855..131778 [+], 92415892062acetylglutamate kinase 
9RC0140131791..132078 [+], 28815892063type IV secretion system protein VirB3  VirB3
10RC0141 (virB4)132168..134585 [+], 241815892064type IV secretion system ATPase VirB4  VirB4
11RC0142134703..137684 [+], 298215892065hypothetical protein  VirB6
12RC0143137671..139656 [+], 198615892066hypothetical protein  VirB6
13RC0144139663..142563 [+], 290115892067hypothetical protein  VirB6
14RC0145142737..145412 [+], 267615892068hypothetical protein  VirB6
15RC0146145565..149026 [+], 346215892069hypothetical protein  VirB6
16RC0147149960..150427 [+], 46815892070phosphate acetyltransferase (Pta) 
17RC0148150702..150935 [+], 23415892071acetate kinase (AckA) 
18RC0149150866..151117 [+], 25215892072acetate kinase (AckA) 
19RC0150151180..151548 [+], 36915892073acetate kinase (AckA) 
20RC0151 (trmD)152244..152948 [+], 70515892074tRNA (guanine-N(1)-)-methyltransferase 
21RC0152 (rplS)152966..153382 [+], 4171589207550S ribosomal protein L19 
22RC0153153552..153788 [-], 23715892076hypothetical protein 
 
Region 2: 251552..251911
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RC0235247010..247210 [+], 20115892158hypothetical protein 
2RC0236247351..247698 [-], 34815892159hypothetical protein 
3RC0237247866..248339 [+], 47415892160hypothetical protein 
4RC0238 (holA)248347..249321 [+], 97515892161DNA polymerase III subunit delta 
5RC0239 (coq7)249456..249995 [+], 54015892162ubiquinone biosynthesis protein coq7 
6RC0240 (coxC)250470..251396 [+], 92715892163cytochrome c oxidase subunit III 
7RC0241251552..251911 [+], 36015892164hypothetical protein  VirB2
8RC0242252255..252887 [-], 63315892165hypothetical protein 
9RC0243 (dapD)252963..253787 [+], 8251617238482,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
10RC0244254086..254409 [-], 32415892167hypothetical protein 
11RC0245254789..254986 [-], 19815892168hypothetical protein 
12RC0246255082..255381 [-], 30015892169hypothetical protein 
13RC0247255368..255526 [-], 15915892170hypothetical protein 
14RC0248255563..255715 [-], 15315892171hypothetical protein 
 
Region 3: 385301..393204
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RC0379381110..381514 [-], 40515892302hypothetical protein 
2RC0380381505..381804 [-], 30015892303hypothetical protein 
3RC0381 (nuoL2)381979..383442 [-], 146415892304monovalent cation/H+ antiporter subunit D 
4RC0382 (nuoN2)383589..384890 [-], 130215892305monovalent cation/H+ antiporter subunit D 
5RC0383384887..385222 [-], 33615892306monovalent cation/H+ antiporter subunit C 
6RC0384 (trbG)385301..386053 [-], 75315892307conjugal transfer protein trbG precursor  VirB9
7RC0385 (virB8)386055..386753 [-], 69915892308virB8 protein  VirB8
8RC0386387220..387399 [+], 18015892309hypothetical protein 
9RC0387387449..388180 [+], 73215892310hypothetical protein  VirB8
10RC0388 (virB9)388167..388640 [+], 47415892311virB9 protein precursor  VirB9
11RC0389 (virB10)388825..390273 [+], 144915892312virB10 protein  VirB10
12RC0390 (virB11)390270..391274 [+], 100515892313type IV secretion system ATPase VirB11  VirB11
13RC0391 (virD4)391429..393204 [+], 177615892314type IV secretion system component VirD4  VirD4
14RC0392 (gppA)393197..394618 [+], 142215892315guanosine pentaphosphate phosphohydrolase 
15RC0393394832..395143 [-], 31215892316hypothetical protein 
16RC0394395298..395561 [-], 26415892317hypothetical protein 
17RC0395396020..396316 [-], 29715892318hypothetical protein 
18RC0396396624..396908 [+], 28515892319hypothetical protein 
19RC0397396853..397071 [+], 21915892320hypothetical protein 
 
Region 4: 1117534..1119966
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RC1214 (ampG3)1113460..1115106 [+], 164715893137ampG protein 
2RC1215 (tatC)1115173..1115931 [+], 75915893138sec-independent protein translocase TatC 
3RC1216 (serS)1115909..1117186 [+], 127815893139seryl-tRNA synthetase 
4RC1217 (virB4)1117534..1119966 [+], 243315893140virB4 protein precursor  VirB4
5RC12181120102..1123590 [+], 348915893141hypothetical protein 
6RC1219 (terC)1123595..1124500 [+], 90615893142tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
 
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU