SecReT4

T4SS
References

T4SS ID	491
Strain	Rickettsia canadensis str. McKiel
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009879
Location	111737..129292; 195946..196302; 846803..854733; 1020985..1023417
Name	VirB
Function	NA
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	1	1	2	0	5	0	2	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_009879
Region 1: 111737..129292

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1E_00460	107108..107887 [+], 780	157803278	ABC transporter permease protein
2	A1E_00465	107890..108651 [+], 762	157803279	ribonucleotide ABC transporter ATP-binding protein
3	A1E_00470 (alr)	108694..108942 [+], 249	157803280	alanine racemase
4	A1E_00475 (rpmB)	109015..109308 [+], 294	157803281	50S ribosomal protein L28
5	A1E_00480	109305..109541 [+], 237	157803282	50S ribosomal protein L31
6	A1E_00485 (engB)	110321..110980 [+], 660	157803283	ribosome biogenesis GTP-binding protein YsxC
7	A1E_00490	111131..111256 [+], 126	157803284	acetylglutamate kinase
8	A1E_00495	111737..112024 [+], 288	157803285	type IV secretion system protein VirB3	VirB3
9	A1E_00500	112279..114696 [+], 2418	157803286	type IV secretion system ATPase VirB4	VirB4
10	A1E_00505	114838..118152 [+], 3315	157803287	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
11	A1E_00510	118139..120157 [+], 2019	157803288	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
12	A1E_00515	120164..123070 [+], 2907	157803289	VirB6-like protein of the type IV secretion system	VirB6
13	A1E_00520	123077..125743 [+], 2667	157803290	hypothetical protein	VirB6
14	A1E_00525	125852..129292 [+], 3441	157803291	hypothetical protein	VirB6
15	A1E_00540	130793..130897 [+], 105	157803292	GTPase EngB
16	A1E_00545	130964..131041 [+], 78	157803293	hypothetical protein
17	A1E_00550	132049..132165 [+], 117	157803294	hypothetical protein
18	A1E_00555	132389..132664 [+], 276	157803295	hypothetical protein
19	A1E_00560 (trmD)	132753..133415 [+], 663	157803296	tRNA (guanine-N(1)-)-methyltransferase
20	A1E_00565 (rplS)	133672..134088 [+], 417	157803297	50S ribosomal protein L19

Region 2: 195946..196302

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1E_00835	191118..191339 [-], 222	157803351	hypothetical protein
2	A1E_00840	191333..192448 [-], 1116	157803352	hypothetical protein
3	A1E_00845 (nusB)	193122..193562 [-], 441	157803353	transcription antitermination protein NusB
4	A1E_00850 (dapD)	194099..194923 [-], 825	157803354	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
5	A1E_00855	195003..195623 [+], 621	157803355	hypothetical protein
6	A1E_00860	195946..196302 [-], 357	157803356	hypothetical protein	VirB2
7	A1E_00865	196452..197303 [-], 852	157803357	cytochrome c oxidase subunit III
8	A1E_00870 (dapD)	197901..198440 [-], 540	157803358	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
9	A1E_00875 (holA)	198589..199560 [-], 972	157803359	DNA polymerase III subunit delta
10	A1E_00880	199727..200197 [-], 471	157803360	hypothetical protein
11	A1E_00885	200419..200691 [+], 273	157803361	hypothetical protein
12	A1E_00890	200877..200969 [-], 93	157803362	hypothetical protein

Region 3: 846803..854733

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1E_04130	842599..842769 [-], 171	157803988	hypothetical protein
2	A1E_04135	842858..842956 [-], 99	157803989	hypothetical protein
3	A1E_04140	843134..843499 [-], 366	157803990	hypothetical protein
4	A1E_04150	844507..844620 [-], 114	157803991	hypothetical protein
5	A1E_04155	845381..846793 [-], 1413	157803992	hypothetical protein
6	A1E_04160	846803..848578 [-], 1776	157803993	type IV secretion system component VirD4	VirD4
7	A1E_04165	848751..849755 [-], 1005	157803994	type IV secretion system ATPase VirB11	VirB11
8	A1E_04170	849752..851200 [-], 1449	157803995	hypothetical protein	VirB10
9	A1E_04175	851337..851819 [-], 483	157803996	hypothetical protein	VirB9
10	A1E_04180	851806..852534 [-], 729	157803997	hypothetical protein	VirB8
11	A1E_04185	853281..853979 [+], 699	157803998	hypothetical protein	VirB8
12	A1E_04190	853981..854733 [+], 753	157803999	hypothetical protein	VirB9
13	A1E_04195	854736..855071 [+], 336	157804000	putative monovalent cation/H+ antiporter subunit C
14	A1E_04200	855204..856490 [+], 1287	157804001	putative monovalent cation/H+ antiporter subunit D
15	A1E_04205	856821..857012 [+], 192	157804002	hypothetical protein
16	A1E_04210	857205..858668 [+], 1464	157804003	putative monovalent cation/H+ antiporter subunit D
17	A1E_04215	858731..858883 [+], 153	157804004	antitoxin of toxin-antitoxin system VapB
18	A1E_04220	859012..859389 [+], 378	157804005	putative monovalent cation/H+ antiporter subunit D

Region 4: 1020985..1023417

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1E_04990	1017160..1018542 [+], 1383	157804150	ampG protein
2	A1E_04995 (dnaE)	1018601..1019356 [+], 756	157804151	DNA polymerase III subunit alpha
3	A1E_05000	1019334..1020611 [+], 1278	157804152	seryl-tRNA synthetase
4	A1E_05005	1020985..1023417 [+], 2433	157804153	Type IV secretion/conjugal transfer ATPase, VirB4 family protein	VirB4
5	A1E_05010	1023567..1027058 [+], 3492	157804154	hypothetical protein
6	A1E_05015	1027063..1027971 [+], 909	157804155	tellurium resistance protein TerC

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686]

This literature contains bioinformatics investigation