SecReT4

T4SS
References

T4SS ID	488
Strain	Rickettsia bellii OSU 85-389
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009883
Location	89113..89400; 173161..190087; 348760..349128; 423890..431585; 1458015..1460438
Name	VirB
Function	NA
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	1	1	2	0	4	0	1	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_009883
Region 1: 89113..89400

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1I_00470 (rpmB)	86362..86655 [+], 294	157826473	50S ribosomal protein L28
2	A1I_00475	86652..86891 [+], 240	157826474	50S ribosomal protein L31
3	A1I_00480 (engB)	87539..88177 [+], 639	157826475	ribosome biogenesis GTP-binding protein YsxC
4	A1I_00485	88125..89057 [+], 933	157826476	acetylglutamate kinase
5	A1I_00490	89113..89400 [+], 288	157826477	type IV secretion system protein VirB3	VirB3
6	A1I_00495	89502..89867 [-], 366	157826478	transposase
7	A1I_00500	89878..90783 [+], 906	157826479	hypothetical protein
8	A1I_00505	90752..92818 [+], 2067	157826480	hypothetical protein
9	A1I_00510	92869..93777 [-], 909	157826481	transposase
10	A1I_00515	93991..94206 [-], 216	157826482	alanyl-tRNA synthetase

Region 2: 173161..190087

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1I_00920	169190..169609 [-], 420	157826557	toxin of toxin-antitoxin (TA) system
2	A1I_00925	169606..169848 [-], 243	157826558	antitoxin of toxin-antitoxin (TA) system Phd
3	A1I_00930	169913..170851 [-], 939	157826559	ribosomal large subunit pseudouridine synthase RluD subfamily protein
4	A1I_00935	170866..171657 [+], 792	157826560	uracil-DNA glycosylase
5	A1I_00940	171775..172536 [-], 762	157826561	transposase
6	A1I_00945	172542..172730 [-], 189	157826562	transposase
7	A1I_00950	173161..175578 [+], 2418	157826563	type IV secretion system ATPase VirB4	VirB4
8	A1I_00955	175772..178891 [+], 3120	157826564	VirB6	VirB6
9	A1I_00960	178878..180902 [+], 2025	157826565	VirB6	VirB6
10	A1I_00965	180909..183776 [+], 2868	157826566	VirB6	VirB6
11	A1I_00980	186614..190087 [+], 3474	157826567	VirB6	VirB6
12	A1I_00985	190318..191343 [-], 1026	157826568	DNA-binding/iron metalloprotein/AP endonuclease
13	A1I_00990	191340..191657 [-], 318	157826569	hypothetical protein
14	A1I_00995 (tgt)	191641..192726 [-], 1086	157826570	queuine tRNA-ribosyltransferase
15	A1I_01000	192956..193069 [-], 114	157826571	hypothetical protein
16	A1I_01005	193118..193678 [-], 561	157826572	hypothetical protein

Region 3: 348760..349128

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1I_01780	344127..344453 [+], 327	157826715	hypothetical protein
2	A1I_01785	344507..344800 [-], 294	157826716	hypothetical protein
3	A1I_01790	345274..345765 [+], 492	157826717	hypothetical protein
4	A1I_01795 (holA)	345762..346754 [+], 993	157826718	DNA polymerase III subunit delta
5	A1I_01800	346775..347314 [+], 540	157826719	ubiquinone biosynthesis protein coq7
6	A1I_01805	347761..348594 [+], 834	157826720	cytochrome c oxidase subunit III
7	A1I_01810	348760..349128 [+], 369	157826721	VirB2-like protein	VirB2
8	A1I_01815	349375..350136 [+], 762	157826722	DNA uptake lipoprotein
9	A1I_01820	350272..351924 [+], 1653	157826723	DNA repair protein RecN
10	A1I_01825	351989..353476 [+], 1488	157826724	thermostable carboxypeptidase

Region 4: 423890..431585

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1I_02270	421640..422044 [-], 405	157826803	toxin of toxin-antitoxin (TA) system VapC
2	A1I_02275	422035..422322 [-], 288	157826804	antitoxin of toxin-antitoxin (TA) system VapB
3	A1I_02280	422420..423829 [-], 1410	157826805	guanosine pentaphosphate phosphohydrolase
4	A1I_02285	423890..425668 [-], 1779	157826806	type IV secretion system protein VirB8	VirD4
5	A1I_02290	425801..426805 [-], 1005	157826807	type IV secretion system ATPase VirB11	VirB11
6	A1I_02295	426802..428235 [-], 1434	157826808	VirB10	VirB10
7	A1I_02300	428342..428827 [-], 486	157826809	VirB9	VirB9
8	A1I_02305	428814..429533 [-], 720	157826810	virulence protein	VirB8
9	A1I_02310	429587..429769 [-], 183	157826811	hypothetical protein
10	A1I_02325	430935..431585 [+], 651	157826812	VirB9	VirB9
11	A1I_02330	431677..432012 [+], 336	157826813	monovalent cation/H+ antiporter subunit C
12	A1I_02335	432090..432293 [-], 204	157826814	monovalent cation/H+ antiporter subunit D
13	A1I_02340	432346..433458 [+], 1113	157826815	monovalent cation/H+ antiporter subunit D
14	A1I_02345	433955..434779 [+], 825	157826816	transposase
15	A1I_02350	434746..434910 [+], 165	157826817	transposase
16	A1I_02355	435050..436513 [+], 1464	157826818	monovalent cation/H+ antiporter subunit D

Region 5: 1458015..1460438

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1I_07535	1453419..1454327 [-], 909	157827778	tellurium resistance protein TerC
2	A1I_07540	1454331..1457813 [-], 3483	157827779	hypothetical protein
3	A1I_07545	1458015..1460438 [-], 2424	157827780	VirB4	VirB4
4	A1I_07550	1460714..1461994 [-], 1281	157827781	seryl-tRNA synthetase
5	A1I_07555	1461981..1462727 [-], 747	157827782	Sec-independent protein translocase TatC
6	A1I_07560	1462803..1464062 [-], 1260	157827783	AmpG protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686]

This literature contains bioinformatics investigation