T4SS ID	479
Strain	Burkholderia pseudomallei MSHR346
Replicon	chromosome I [Browse all T4SS(s) in this replicon]
Accession	NC_012695
Location	920942..945330
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_012695
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	GBP346_A0950	916051..916344 [-], 294	237811223	helix-turn-helix domain protein
2	GBP346_A0951	916567..916914 [+], 348	237811224	hypothetical protein
3	GBP346_A0952	916983..917126 [-], 144	237811225	hypothetical protein
4	GBP346_A0953	917256..918005 [+], 750	237811226	hypothetical protein
5	GBP346_A0954	918089..918379 [+], 291	237811227	hypothetical protein
6	GBP346_A0955	918406..919263 [+], 858	237811228	replication protein A
7	GBP346_A0956	919517..920155 [+], 639	237811229	cobyrinic acid ac-diamide synthase
8	GBP346_A0957	920143..920415 [+], 273	237811230	hypothetical protein
9	GBP346_A0958	920412..920945 [+], 534	237811231	hypothetical protein
10	GBP346_A0959	920942..921529 [+], 588	237811232	traf peptidase, serine peptidase, merops family s26c	TraF
11	GBP346_A0960	921965..923926 [+], 1962	237811233	hypothetical protein
12	GBP346_A0961	925072..926466 [+], 1395	237811234	Rieske (2Fe-2S) domain protein
13	GBP346_A0962	926463..926939 [+], 477	237811235	anthranilate dioxygenase small subunit
14	GBP346_A0963	928663..929502 [+], 840	237811236	hydroxyquinol 1,2-dioxygenase (1,2-HQD)
15	GBP346_A0964	929707..930783 [+], 1077	237811237	maleylacetate reductase
16	GBP346_A0965	931006..931860 [+], 855	237811238	4-hydroxybenzoate transporter
17	GBP346_A0966	932160..932309 [+], 150	237811239	hypothetical protein
18	GBP346_A0967	932425..933393 [+], 969	237811240	LysR family transcriptional regulator
19	GBP346_A0968	933772..935775 [+], 2004	237811241	conjugal transfer coupling protein TraG	TraG
20	GBP346_A0969	935772..936236 [+], 465	237811242	CopG domain protein DNA-binding domain protein
21	GBP346_A0970 (trbB)	936233..937261 [+], 1029	237811243	P-type conjugative transfer ATPase TrbB	TrbB
22	GBP346_A0971	937258..937632 [+], 375	237811244	conjugal transfer protein TrbC	TrbC
23	GBP346_A0972	937629..937898 [+], 270	237811245	conjugal transfer protein	TrbD
24	GBP346_A0973	937909..940371 [+], 2463	237811246	conjugal transfer ATPase TrbE	TrbE
25	GBP346_A0974 (trbJ)	940368..941132 [+], 765	237811247	conjugal transfer protein TrbJ	TrbJ
26	GBP346_A0975 (trbL)	941181..942329 [+], 1149	237811248	P-type conjugative transfer protein TrbL	TrbL
27	GBP346_A0976	942342..943046 [+], 705	237811249	conjugal transfer protein TrbF	TrbF
28	GBP346_A0977 (trbG)	943043..944047 [+], 1005	237811250	P-type conjugative transfer protein TrbG	TrbG
29	GBP346_A0978	944050..945330 [+], 1281	237811251	conjugation TrbI family protein	TrbI
30	GBP346_A0979	945327..945569 [+], 243	237811252	hypothetical protein
31	GBP346_A0980	946517..946909 [-], 393	237811253	ISPsy5, transposase
32	GBP346_A0981	947965..948105 [+], 141	237811254	hypothetical protein
33	GBP346_A0982	948470..949219 [+], 750	237811255	3-oxoadipate CoA-transferase, A subunit
34	GBP346_A0983	949216..949884 [+], 669	237811256	3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B)

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6064 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation