The information of T4SS components from NC_012730 |
| Region 1: 327894..328253 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RPR_01985 | 323217..323663 [+], 447 | 238650448 | hypothetical protein | | |
| 2 | RPR_02005 (dapD) | 326018..326842 [-], 825 | 238650449 | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase | | |
| 3 | RPR_02010 | 326918..327550 [+], 633 | 238650450 | hypothetical protein | | |
| 4 | RPR_02015 | 327894..328253 [-], 360 | 238650451 | virB2 protein | VirB2 | |
| 5 | RPR_02020 | 328409..329260 [-], 852 | 238650452 | cytochrome c oxidase subunit III | | |
| 6 | RPR_02025 | 329801..330340 [-], 540 | 238650453 | 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase | | |
| 7 | RPR_02030 (holA) | 330476..331450 [-], 975 | 238650454 | DNA polymerase III subunit delta | | |
| 8 | RPR_02035 | 331458..331931 [-], 474 | 238650455 | hypothetical protein | | |
| |
| Region 2: 474480..491826 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RPR_02770 | 469702..470106 [-], 405 | 238650561 | hypothetical protein | | |
| 2 | RPR_02775 | 470189..470473 [-], 285 | 238650562 | hypothetical protein | | |
| 3 | RPR_02780 | 470781..471278 [-], 498 | 238650563 | hypothetical protein | | |
| 4 | RPR_02800 (rpmB) | 472074..472367 [+], 294 | 238650564 | 50S ribosomal protein L28 | | |
| 5 | RPR_02805 | 472364..472600 [+], 237 | 238650565 | 50S ribosomal protein L31 | | |
| 6 | RPR_02810 (engB) | 472958..473596 [+], 639 | 238650566 | ribosome biogenesis GTP-binding protein YsxC | | |
| 7 | RPR_02815 | 473544..474467 [+], 924 | 238650567 | acetylglutamate kinase | | |
| 8 | RPR_02820 | 474480..474767 [+], 288 | 238650568 | type IV secretion system protein VirB3 | VirB3 | |
| 9 | RPR_02825 | 474983..477400 [+], 2418 | 238650569 | type IV secretion system ATPase VirB4 | VirB4 | |
| 10 | RPR_02830 | 477518..480484 [+], 2967 | 238650570 | virB6a protein | VirB6 | |
| 11 | RPR_02835 | 480471..482456 [+], 1986 | 238650571 | virB6b protein | VirB6 | |
| 12 | RPR_02840 | 482463..485363 [+], 2901 | 238650572 | virB6c protein | VirB6 | |
| 13 | RPR_02845 | 485537..488212 [+], 2676 | 238650573 | virB6d protein | VirB6 | |
| 14 | RPR_02850 | 488365..491826 [+], 3462 | 238650574 | virB6e protein | VirB6 | |
| 15 | RPR_02885 (trmD) | 495051..495755 [+], 705 | 238650575 | tRNA (guanine-N(1)-)-methyltransferase | | |
| 16 | RPR_02890 (rplS) | 495773..496189 [+], 417 | 238650576 | 50S ribosomal protein L19 | | |
| |
| Region 3: 720774..728674 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RPR_04215 | 716584..716988 [-], 405 | 238650728 | Toxin of toxin-antitoxin system VapC | | |
| 2 | RPR_04220 | 716979..717266 [-], 288 | 238650729 | Antitoxin of toxin-antitoxin (TA) system VapB | | |
| 3 | RPR_04225 | 717453..718916 [-], 1464 | 238650730 | putative monovalent cation/H+ antiporter subunit D | | |
| 4 | RPR_04230 | 719062..720177 [-], 1116 | 238650731 | putative monovalent cation/H+ antiporter subunit D | | |
| 5 | RPR_04235 | 720360..720695 [-], 336 | 238650732 | putative monovalent cation/H+ antiporter subunit C | | |
| 6 | RPR_04240 | 720774..721526 [-], 753 | 238650733 | conjugal transfer protein trbG precursor, virB9a | VirB9 | |
| 7 | RPR_04245 | 721528..722226 [-], 699 | 238650734 | virB8a protein | VirB8 | |
| 8 | RPR_04250 | 722691..722870 [+], 180 | 238650735 | virB7 protein | | |
| 9 | RPR_04255 | 722920..723651 [+], 732 | 238650736 | virB8b protein | VirB8 | |
| 10 | RPR_04260 | 723638..724111 [+], 474 | 238650737 | virB9b protein | VirB9 | |
| 11 | RPR_04265 | 724295..725743 [+], 1449 | 238650738 | virB10 protein | VirB10 | |
| 12 | RPR_04270 | 725740..726744 [+], 1005 | 238650739 | type IV secretion system ATPase VirB11 | VirB11 | |
| 13 | RPR_04275 | 726899..728674 [+], 1776 | 238650740 | type IV secretion system component VirD4 | VirD4 | |
| 14 | RPR_04280 | 728667..730088 [+], 1422 | 238650741 | exopolyphosphatase | | |
| 15 | RPR_04315 | 732492..732776 [-], 285 | 238650742 | phage host specificity protein | | |
| |
| Region 4: 826493..828925 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RPR_04815 | 822537..824078 [+], 1542 | 238650800 | AmpG | | |
| 2 | RPR_04820 | 824145..824900 [+], 756 | 238650801 | Sec-independent protein translocase protein | | |
| 3 | RPR_04825 | 824878..826155 [+], 1278 | 238650802 | seryl-tRNA synthetase | | |
| 4 | RPR_04830 | 826493..828925 [+], 2433 | 238650803 | virB4b ATPase | VirB4 | |
| 5 | RPR_04835 | 829061..832549 [+], 3489 | 238650804 | hypothetical protein | | |
| 6 | RPR_04840 | 832554..833459 [+], 906 | 238650805 | tellurium resistance protein TerC | | |
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T4SS ID
This T4SS is identified in this study.
Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.