 T4SS ID | 454 |
| Strain | Ruegeria sp. PR1b plasmid pSD25 (NC_004574) |
| Replicon | plasmid pSD25 [Browse all T4SS(s) in this replicon] |
| Accession | NC_004574 |
| Location | 66030..84508 |
| Name | VirB |
| Function | NA |
| Classification | Type IVA; Type P |
 This T4SS has been mentioned in a genome sequencing report. | |
T4SS components |
| Component | VirB1 | VirB2 | VirB3 | VirB4 | VirB5 | VirB6 | VirB7 | VirB8 | VirB9 |
| Number | 2 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 |
| Component | VirB10 | VirB11 | VirD4 | ||||||
| Number | 1 | 1 | 1 |
The information of T4SS components from NC_004574 | ||||||
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | rc157 | 62711..63616 [+], 906 | 28558884 | RC157 | ||
| 2 | rc158 | 63854..64645 [+], 792 | 28558885 | RC158 | ||
| 3 | rc159 | 65115..66026 [-], 912 | 28558886 | RC159 | ||
| 4 | rc160 | 66030..67037 [+], 1008 | 28558887 | RC160 | VirB1 | |
| 5 | rc161 | 67573..69963 [+], 2391 | 28558888 | RC161 | VirB4 | |
| 6 | rc162 | 70099..71271 [+], 1173 | 28558889 | RC162 | VirB1 | |
| 7 | rc163 | 71271..72080 [+], 810 | 28558890 | RC163 | VirB5 | |
| 8 | rc164 | 72097..72750 [+], 654 | 28558891 | RC164 | VirB8 | |
| 9 | rc165 | 72909..73448 [+], 540 | 28558892 | RC165 | VirB9 | |
| 10 | rc166 | 73379..74824 [+], 1446 | 28558893 | RC166 | VirB10 | |
| 11 | rc167 | 74766..75815 [+], 1050 | 28558894 | RC167 | VirB11 | |
| 12 | rc168 | 76429..77505 [+], 1077 | 28558895 | RC168 | VirB6 | |
| 13 | rc169 | 77677..78933 [+], 1257 | 28558896 | RC169 | ||
| 14 | rc170 | 78933..80651 [+], 1719 | 28558897 | RC170 | ||
| 15 | rc171 | 81395..82372 [+], 978 | 28558898 | RC171 | ||
| 16 | rc172 | 82508..84508 [-], 2001 | 28558899 | RC172 | VirD4 | |
| 17 | rc173 | 84517..86850 [-], 2334 | 28558900 | RC173 | ||
| 18 | rc174 | 87840..88970 [-], 1131 | 28558901 | RC174 | ||
 Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any. |
Download FASTA format files |
| Proteins Genes |
| (1) Zhong Z; Caspi R; Helinski D; Knauf V; Sykes S; O'Byrne C; Shea TP; Wilkinson JE; DeLoughery C; Toukdarian A (2003). Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b. Plasmid. 49(3):233-52. [PudMed:12749836] |