T4SS ID	349
Strain	Bordetella petrii DSM 12804
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010170
Location	2269545..2297191
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_010170
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Bpet2181	2264604..2264897 [-], 294	163856492	transcriptional regulator
2	Bpet2182	2265103..2265450 [+], 348	163856493	lipoprotein
3	Bpet2183	2265793..2266584 [+], 792	163856494	hypothetical protein
4	Bpet2184	2266653..2266949 [+], 297	163856495	hypothetical protein
5	Bpet2185	2266976..2267833 [+], 858	163856496	replication initiator/transcription repressor protein
6	Bpet2186	2268087..2268725 [+], 639	163856497	partition protein
7	Bpet2187	2268722..2269006 [+], 285	163856498	hypothetical protein
8	Bpet2188	2269003..2269548 [+], 546	163856499	transposon
9	Bpet2189 (traF1)	2269545..2270144 [+], 600	163856500	conjugal transfer protein TraF	TraF
10	Bpet2190 (virD2)	2270521..2272515 [+], 1995	163856501	conjugal transfer protein VirD2
11	Bpet2191 (fadA2)	2272658..2273791 [-], 1134	163856502	3-ketoacyl-CoA thiolase
12	Bpet2192	2274115..2275116 [-], 1002	163856503	oxidoreductase
13	Bpet2193	2275144..2275611 [-], 468	163856504	hypothetical protein
14	Bpet2194 (fadA3)	2275624..2276808 [-], 1185	163856505	hypothetical protein
15	Bpet2195	2276828..2277355 [-], 528	163856506	hypothetical protein
16	Bpet2196	2277415..2277879 [+], 465	163856507	MarR family transcriptional regulator
17	Bpet2197	2277876..2279153 [+], 1278	163856508	transmembrane transport protein
18	Bpetpseudo_08 (nerA)	2279204..2279434 [+], 231	163856509	hypothetical protein
19	Bpetpseudo_09	2279400..2279561 [+], 162	163856510	hypothetical protein
20	Bpet2198	2279687..2280583 [-], 897	163856511	LysR family transcriptional regulator
21	Bpet2199	2280769..2281881 [+], 1113	163856512	threonine aldolase
22	Bpet2200	2282008..2282391 [+], 384	163856513	tautomerase
23	Bpet2201	2282366..2283625 [+], 1260	163856514	MFS permease
24	Bpet2202	2283682..2284626 [+], 945	163856515	LysR family transcriptional regulator
25	Bpet2203	2284623..2284901 [+], 279	163856516	lipoprotein
26	Bpet2204 (traG1)	2285138..2287141 [+], 2004	163856517	conjugal transfer coupling protein TraG	TraG
27	Bpet2205	2287138..2287602 [+], 465	163856518	DNA-binding protein
28	Bpet2206 (trbB1)	2287599..2288681 [+], 1083	163856519	conjugal transfer protein TrbB	TrbB
29	Bpet2207 (trbC1)	2288678..2289070 [+], 393	163856520	conjugal transfer protein TrbC	TrbC
30	Bpet2208 (trbD1)	2289067..2289339 [+], 273	163856521	conjugal transfer protein TrbD	TrbD
31	Bpet2209 (trbE1)	2289352..2291817 [+], 2466	163856522	conjugal transfer ATPase TrbE	TrbE
32	Bpet2210 (trbJ1)	2291814..2292539 [+], 726	163856523	conjugal transfer protein TrbJ	TrbJ
33	Bpet2211	2292551..2292835 [+], 285	163856524	lipoprotein
34	Bpet2212 (trbL1)	2292832..2294202 [+], 1371	163856525	conjugal transfer protein TrbL	TrbL
35	Bpet2213 (trbF1)	2294215..2294919 [+], 705	163856526	conjugal transfer protein TrbF	TrbF
36	Bpet2214 (trbG1)	2294916..2295908 [+], 993	163856527	conjugal transfer protein TrbG	TrbG
37	Bpet2215 (trbI1)	2295911..2297191 [+], 1281	163856528	conjugal transfer protein TrbI	TrbI
38	Bpet2216	2297188..2297430 [+], 243	163856529	hypothetical protein
39	Bpet2217	2297655..2298419 [-], 765	163856530	hypothetical protein
40	Bpet2218 (ugpQ)	2298435..2299205 [-], 771	163856531	glycerophosphodiester phosphodiesterase
41	Bpet2219	2299708..2301669 [+], 1962	163856532	peptidyl-prolyl cis-trans isomerase D

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6040 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation