T4SS ID	304
Strain	Shewanella sp. ANA-3
Replicon	chromosome 1 [Browse all T4SS(s) in this replicon]
Accession	NC_008577
Location	1480079..1503157
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_008577
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Shewana3_1258	1475102..1475392 [-], 291	117919707	XRE family transcriptional regulator
2	Shewana3_1259	1475678..1476007 [+], 330	117919708	putative lipoprotein
3	Shewana3_1261	1476330..1477127 [+], 798	117919709	hypothetical protein
4	Shewana3_1262	1477211..1477495 [+], 285	117919710	hypothetical protein
5	Shewana3_1263	1477522..1478379 [+], 858	117919711	putative replication initiator and transcription repressor protein
6	Shewana3_1264	1478666..1479304 [+], 639	117919712	cobyrinic acid a,c-diamide synthase
7	Shewana3_1265	1479301..1479552 [+], 252	117919713	hypothetical protein
8	Shewana3_1266	1479549..1480082 [+], 534	117919714	hypothetical protein
9	Shewana3_1267	1480079..1480666 [+], 588	117919715	TraF peptidase	TraF
10	Shewana3_1268	1481079..1483052 [+], 1974	117919716	hypothetical protein
11	Shewana3_1269	1483049..1483843 [-], 795	117919717	XRE family transcriptional regulator
12	Shewana3_1270	1483912..1485396 [+], 1485	117919718	major facilitator superfamily transporter
13	Shewana3_1271	1485411..1485686 [+], 276	117919719	LysR family transcriptional regulator
14	Shewana3_1272	1485693..1485914 [+], 222	117919720	hypothetical protein
15	Shewana3_1273	1485995..1486189 [+], 195	117919721	Smp-30/Cgr1 family protein
16	Shewana3_1274	1486226..1486606 [+], 381	117919722	Smp-30/Cgr1 family protein
17	Shewana3_1275	1486964..1487641 [+], 678	117919723	IclR family transcriptional regulator
18	Shewana3_1276	1487726..1488133 [+], 408	117919724	hypothetical protein
19	Shewana3_1277	1488130..1489353 [+], 1224	117919725	major facilitator superfamily transporter
20	Shewana3_1278	1489643..1490584 [+], 942	117919726	LysR family transcriptional regulator
21	Shewana3_1279	1490581..1490844 [+], 264	117919727	putative lipoprotein
22	Shewana3_1280	1491078..1493075 [+], 1998	117919728	conjugal transfer coupling protein TraG	TraG
23	Shewana3_1281	1493072..1493536 [+], 465	117919729	CopG/DNA-binding domain-containing protein
24	Shewana3_1282	1493533..1494603 [+], 1071	117919730	type II secretion system protein E	TrbB
25	Shewana3_1283	1494600..1494986 [+], 387	117919731	conjugal transfer protein TrbC	TrbC
26	Shewana3_1284	1494983..1495252 [+], 270	117919732	putative conjugal transfer trbD transmembrane protein	TrbD
27	Shewana3_1285	1495263..1497713 [+], 2451	117919733	conjugal transfer ATPase TrbE	TrbE
28	Shewana3_1286	1497710..1498453 [+], 744	117919734	conjugal transfer protein TrbJ	TrbJ
29	Shewana3_1287	1498466..1498783 [+], 318	117919735	putative lipoprotein
30	Shewana3_1288	1498780..1500162 [+], 1383	117919736	conjugal transfer protein TrbL	TrbL
31	Shewana3_1289	1500181..1500885 [+], 705	117919737	conjugal transfer protein TrbF	TrbF
32	Shewana3_1290	1500882..1501874 [+], 993	117919738	conjugal transfer protein TrbG/VirB9/CagX	TrbG
33	Shewana3_1291	1501877..1503157 [+], 1281	117919739	conjugation TrbI family protein	TrbI
34	Shewana3_1292	1503154..1503399 [+], 246	117919740	hypothetical protein
35	Shewana3_1293	1504135..1506138 [-], 2004	117919741	methyl-accepting chemotaxis sensory transducer
36	Shewana3_1294	1506398..1506643 [+], 246	117919742	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6034 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation