T4SS ID	285
Strain	Stenotrophomonas maltophilia K279a
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010943
Location	1324734..1348631
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_010943
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Smlt1278 (rplU)	1322082..1322390 [+], 309	190573296	50S ribosomal protein L21
2	Smlt1279 (rpmA)	1322409..1322672 [+], 264	190573297	50S ribosomal protein L27
3	Smlt1280 (obgE)	1322866..1323918 [+], 1053	190573298	GTPase ObgE
4	Smlt1282	1324492..1324737 [-], 246	190573299	hypothetical protein
5	Smlt1283 (trbI)	1324734..1325993 [-], 1260	190573300	conjugal transfer protein	TrbI
6	Smlt1284 (trbG)	1325996..1326982 [-], 987	190573301	conjugal transfer protein	TrbG
7	Smlt1285 (trbF)	1326979..1327683 [-], 705	190573302	conjugal transfer protein TrbF	TrbF
8	Smlt1286 (trbL)	1327702..1329000 [-], 1299	190573303	conjugal transfer protein TrbL	TrbL
9	Smlt1287 (trbJ)	1329012..1329749 [-], 738	190573304	conjugal transfer protein TrbJ	TrbJ
10	Smlt1288 (trbE)	1329746..1332232 [-], 2487	190573305	conjugal transfer ATPase TrbE	TrbE
11	Smlt1289 (trbD)	1332243..1332515 [-], 273	190573306	conjugal transfer protein	TrbD
12	Smlt1290 (trbC)	1332512..1332895 [-], 384	190573307	conjugal transfer protein	TrbC
13	Smlt1291 (trbB)	1332892..1333932 [-], 1041	190573308	conjugal transfer protein	TrbB
14	Smlt1292	1333929..1334375 [-], 447	190573309	hypothetical protein
15	Smlt1293 (traG)	1334372..1336372 [-], 2001	190573310	conjugal transfer coupling protein TraG	TraG
16	Smlt1294	1336606..1336866 [-], 261	190573311	hypothetical protein
17	Smlt1295	1336911..1337804 [-], 894	190573312	LysR family transcriptional regulator
18	Smlt1298	1338123..1338425 [-], 303	190573313	hypothetical protein
19	Smlt1299	1338412..1339266 [-], 855	190573314	NAD(P)H dehydrogenase
20	Smlt1300	1339362..1340264 [+], 903	190573315	LysR family transcriptional regulator
21	Smlt1301	1340359..1340619 [-], 261	190573316	hypothetical protein
22	Smlt1302	1340656..1341549 [-], 894	190573317	LysR family transcriptional regulator
23	Smlt1303	1341582..1342424 [-], 843	190573318	hypothetical protein
24	Smlt1304	1342421..1342804 [-], 384	190573319	4-carboxymuconolactone decarboxylase
25	Smlt1305	1342737..1343207 [-], 471	190573320	MerR family transcriptional regulator
26	Smlt1306	1343295..1344665 [-], 1371	190573321	MFS family transmembrane transporter
27	Smlt1307	1344784..1345635 [+], 852	190573322	LysR family transcriptional regulator
28	Smlt1308	1345632..1347596 [-], 1965	190573323	hypothetical protein
29	Smlt1309	1347593..1348030 [-], 438	190573324	hypothetical protein
30	Smlt1310	1348056..1348631 [-], 576	190573325	transmembrane anchor conjugal transfer protein	TraF
31	Smlt1311	1348628..1349152 [-], 525	190573326	hypothetical protein
32	Smlt1312	1349149..1349412 [-], 264	190573327	parB partition protein
33	Smlt1313	1349409..1350047 [-], 639	190573328	ParA/CobQ/CobB/MinD nucleotide binding domain-containing protein
34	Smlt1314	1350298..1351131 [-], 834	190573329	RepA-like replication protein
35	Smlt1315	1351158..1351448 [-], 291	190573330	hypothetical protein
36	Smlt1316	1351532..1352335 [-], 804	190573331	hypothetical protein
37	Smlt1318	1352687..1353037 [-], 351	190573332	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6068 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation