T4SS ID	239
Strain	Acidovorax sp. JS42
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_008782
Location	2701523..2704188; 3076590..3103658
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	2
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	1	2	0	0	1

The information of T4SS components from NC_008782
Region 1: 2701523..2704188
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Ajs_2530	2696611..2699397 [-], 2787	121594870	putative DNA methylase
2	Ajs_2531	2699456..2699656 [-], 201	121594871	phage transcriptional regulator AlpA
3	Ajs_2534	2700955..2701185 [-], 231	121594872	hypothetical protein
4	Ajs_2535	2701248..2701526 [-], 279	121594873	hypothetical protein
5	Ajs_2536	2701523..2703121 [-], 1599	121594874	TrbL/VirB6 plasmid conjugal transfer protein	TrbL
6	Ajs_2537	2703118..2703387 [-], 270	121594875	putative entry/exclusion protein TrbK	TrbK
7	Ajs_2538	2703403..2704188 [-], 786	121594876	conjugal transfer protein TrbJ	TrbJ
8	Ajs_2539	2704430..2704801 [-], 372	121594877	conjugal transfer relaxosome component TraJ
9	Ajs_2540	2705121..2705399 [-], 279	121594878	putative OriT-binding protein, TraK
10	Ajs_2541	2706113..2706982 [-], 870	121594879	plasmid and phage iteron-binding protein
11	Ajs_2542	2706972..2707850 [-], 879	121594880	replication protein A
12	Ajs_2543	2707854..2708108 [-], 255	121594881	hypothetical protein
13	Ajs_2544	2708170..2709159 [+], 990	121594882	hypothetical protein
Region 2: 3076590..3103658
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Ajs_2897	3072923..3073810 [+], 888	121595218	UDP-glucose pyrophosphorylase
2	Ajs_2898	3073922..3074149 [-], 228	121595219	SirA family protein
3	Ajs_2899	3074155..3074718 [-], 564	121595220	NUDIX hydrolase
4	Ajs_2900 (cysM)	3074834..3075739 [-], 906	121595221	cysteine synthase B
5	Ajs_2901	3076351..3076593 [-], 243	121595222	hypothetical protein
6	Ajs_2902	3076590..3077852 [-], 1263	121595223	conjugation TrbI family protein	TrbI
7	Ajs_2903	3077854..3078834 [-], 981	121595224	conjugal transfer protein TrbG/VirB9/CagX	TrbG
8	Ajs_2904	3078831..3079535 [-], 705	121595225	conjugal transfer protein TrbF	TrbF
9	Ajs_2905	3079554..3080888 [-], 1335	121595226	conjugal transfer protein TrbL	TrbL
10	Ajs_2906	3080885..3081208 [-], 324	121595227	putative lipoprotein
11	Ajs_2907	3081220..3081948 [-], 729	121595228	conjugal transfer protein TrbJ	TrbJ
12	Ajs_2908	3081945..3084380 [-], 2436	121595229	conjugal transfer ATPase TrbE	TrbE
13	Ajs_2909	3084390..3084662 [-], 273	121595230	putative conjugal transfer TrbD transmembrane protein	TrbD
14	Ajs_2910	3084659..3085036 [-], 378	121595231	conjugal transfer protein TrbC	TrbC
15	Ajs_2911	3085033..3086067 [-], 1035	121595232	type II secretion system protein E	TrbB
16	Ajs_2912	3086064..3086510 [-], 447	121595233	CopG/DNA-binding domain-containing protein
17	Ajs_2913	3086507..3088504 [-], 1998	121595234	conjugal transfer coupling protein TraG	TraG
18	Ajs_2915	3088740..3089018 [-], 279	121595235	putative lipoprotein
19	Ajs_2916	3089151..3090665 [-], 1515	121595236	transposase IS66
20	Ajs_2917	3090746..3091057 [-], 312	121595237	IS66 Orf2 family protein
21	Ajs_2918	3091078..3091530 [-], 453	121595238	transposase IS3/IS911 family protein
22	Ajs_2919	3091527..3092432 [-], 906	121595239	LysR family transcriptional regulator
23	Ajs_2920	3092469..3092786 [-], 318	121595240	hypothetical protein
24	Ajs_2921	3092812..3093846 [-], 1035	121595241	secretion protein HlyD family protein
25	Ajs_2923	3094607..3095569 [-], 963	121595242	transposase IS116/IS110/IS902 family protein
26	Ajs_2924	3096608..3098143 [-], 1536	121595243	RND efflux system outer membrane lipoprotein
27	Ajs_2925	3098244..3099023 [+], 780	121595244	TetR family transcriptional regulator
28	Ajs_2926	3099023..3099514 [+], 492	121595245	MarR family transcriptional regulator
29	Ajs_2927	3099511..3100470 [+], 960	121595246	transposase, IS4 family protein
30	Ajs_2929	3103047..3103658 [-], 612	121595247	TraF peptidase
31	Ajs_2930	3103655..3104200 [-], 546	121595248	hypothetical protein
32	Ajs_2931	3104197..3104472 [-], 276	121595249	hypothetical protein
33	Ajs_2932	3104469..3105107 [-], 639	121595250	cobyrinic acid a,c-diamide synthase
34	Ajs_2933	3105361..3106218 [-], 858	121595251	putative replication initiator and transcription repressor protein
35	Ajs_2934	3106245..3106565 [-], 321	121595252	hypothetical protein
36	Ajs_2935	3106634..3107383 [-], 750	121595253	hypothetical protein
37	Ajs_2936	3107725..3108072 [-], 348	121595254	putative lipoprotein
38	Ajs_2937	3108295..3108588 [+], 294	121595255	helix-turn-helix domain-containing protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6039 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation