SecReT4
T4SS ID216
StrainXanthomonas albilineans GPE PC73
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_013722
Location740196..740690; 1913110..1914222; 2156995..2187640; 2817683..2818189
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number111103011
ComponentVirB10VirB11VirD4
Number112

The information of T4SS components from NC_013722
Region 1: 740196..740690
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XALc_0682735752..736069 [+], 318285017477hypothetical protein 
2XALc_0683736105..736341 [+], 237285017478hypothetical protein 
3XALc_0684736671..737261 [+], 591285017479hypothetical protein 
4XALc_0685737287..739815 [+], 2529285017480hypothetical protein 
5XALc_0686740196..740474 [+], 279285017481type IV secretion system subunit VirD4  VirD4
6XALc_0687740520..740690 [+], 171285017482type IV secretion system subunit VirD4  VirD4
7XALc_0688740885..742534 [+], 1650285017483nad(+) synthase (glutamine-hydrolyzing) protein 
8XALc_0689742559..743542 [-], 984285017484hypothetical protein 
9XALc_0690743539..744828 [-], 1290285017485hypothetical protein 
 
Region 2: 1913110..1914222
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XALc_16181910707..1911354 [-], 648285018396LuxR family transcriptional regulator 
2XALc_16191911865..1912326 [+], 462285018397hypothetical protein 
3XALc_1620 (virB6-2)1913110..1914222 [+], 1113285018398type IV secretion system protein Virb6  VirB6
4XALc_16211914852..1915412 [+], 561285018399hypothetical protein 
5XALc_16221915565..1917187 [+], 1623285018400hypothetical protein 
6XALc_16231917087..1917410 [+], 324285018401isxal1 transposase orf a protein 
7XALc_16241917407..1918318 [+], 912285018402isxal1 transposase orf b protein 
 
Region 3: 2156995..2187640
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XALc_1831 (glk1)2152342..2153349 [+], 1008285018601glucokinase 
2XALc_1832 (pgl)2153346..2154065 [+], 7202850186026-phosphogluconolactonase 
3XALc_1833 (edd)2154176..2156092 [+], 1917285018603dihydroxy-acid and 6-phosphogluconate dehydratase 
4XALc_1834 (alkH)2156174..2156827 [+], 654285018604keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 
5XALc_1835 (virB4)2156995..2159466 [-], 2472285018605type IV secretion system protein Virb4  VirB4
6XALc_1836 (virB3)2159635..2159946 [-], 312285018606type IV secretion system protein Virb3  VirB3
7XALc_1837 (virB2)2159939..2160343 [-], 405285018607type IV secretion system protein Virb2  VirB2
8XALc_1838 (virB1)2160414..2161301 [-], 888285018608virb1 protein  VirB1
9XALc_1839 (virB11)2161413..2162468 [-], 1056285018609protien  VirB11
10XALc_1840 (virB10)2162487..2163662 [-], 1176285018610virb10 protein  VirB10
11XALc_1841 (virB9)2163671..2164432 [-], 762285018611type IV secretion system protein Virb9  VirB9
12XALc_1842 (virB8)2164429..2165403 [-], 975285018612type IV secretion system protein Virb8  VirB8
13XALc_18432165462..2165905 [-], 444285018613hypothetical protein 
14XALc_18442166537..2166902 [-], 366285018614transposase isxac2 
15XALc_18452166739..2167119 [-], 381285018615transposase isxac2 
16XALc_18462167180..2167299 [-], 120285018616transposase isxac2 
17XALc_18472167318..2167404 [-], 87285018617transposase isxac2 
18XALc_18482167534..2170071 [-], 2538285018618truncated non-ribosomal peptide synthetase 
19XALc_18492170068..2170961 [-], 894285018619hydrolase 
20XALc_18502170979..2171752 [-], 774285018620hydrolase 
21XALc_18512171803..2173062 [-], 1260285018621cytochrome P450 
22XALc_18522173650..2173766 [+], 117285018622isxal1 transposase orfa (fragment) protein 
23XALc_18532173886..2174140 [+], 255285018623isxac3 transposase orfa (fragment) protein 
24XALc_18542174285..2174647 [+], 363285018624isxac3 transposase orfb (fragment) protein 
25XALc_18552174536..2174889 [+], 354285018625isxac3 transposase orfb (fragment) protein 
26XALc_18562175502..2176695 [+], 1194285018626phage-related integrase 
27XALc_18572177062..2177817 [+], 756285018627hypothetical protein 
28XALc_18582177981..2178181 [+], 201285018628hypothetical protein 
29XALc_18592178184..2178546 [+], 363285018629hypothetical protein 
30XALc_18602178543..2180633 [+], 2091285018630hypothetical protein 
31XALc_18612180783..2181184 [+], 402285018631hypothetical protein 
32XALc_18622181990..2182577 [+], 588285018632hypothetical protein 
33XALc_18632182603..2184504 [+], 1902285018633hypothetical protein 
34XALc_18642184532..2185086 [+], 555285018634hypothetical protein 
35XALc_18652185340..2185900 [-], 561285018635hypothetical protein 
36XALc_18662185975..2186484 [-], 510285018636hypothetical protein 
37XALc_1867 (virB6-1)2186528..2187640 [-], 1113285018637type IV secretion system protein Virb6  VirB6
38XALc_18682188012..2188464 [+], 453285018638hypothetical protein 
39XALc_1870 (uvrB)2188637..2190655 [-], 2019285018639excinuclease ABC subunit B protein 
40XALc_18712190803..2191339 [+], 537285018640type IV pilus assembly protein FimT 
41XALc_18722191884..2192147 [+], 264285018641is1404 transposase orf a protein 
 
Region 4: 2817683..2818189
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XALc_23552813339..2813986 [+], 648285019116hypothetical protein 
2XALc_2356 (GltA)2814165..2815454 [-], 1290285019117citrate synthase 
3XALc_2357 (RpmE)2815744..2815986 [-], 243285019118ribosomal protein L31 
4XALc_23582816416..2816604 [-], 189285019119hypothetical protein 
5XALc_23592817240..2817458 [+], 219285019120hypothetical protein 
6XALc_2360 (VirB6)2817683..2818189 [+], 507285019121virb6 protein  VirB6
7XALc_23612818467..2818703 [+], 237285019122hypothetical protein 
8XALc_23622818661..2819095 [-], 435285019123transposase is1477 orfb (fragment) protein 
9XALc_23632818948..2819151 [-], 204285019124transposase is1477 orfa (fragment) protein 
10XALc_23642819724..2820371 [+], 648285019125isxal5 transposase (fragment) protein 
11XALc_23652820311..2820760 [+], 450285019126isxal5 transposase (fragment) protein 
12XALc_23662820870..2822024 [+], 1155285019127serine-pyruvate aminotransferase 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_013722

Genomics & Bioinformatics Group in MML, SJTU