SecReT4

T4SS
References

T4SS ID	185
Strain	Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_012751
Location	951294..973321
Name	Tra_I
Function	NA
Classification	Type IVB; Type I
This T4SS is identified in this study.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	1	1	1	1	1	0
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	0	0	0	0	1	0	1	1	0
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_012751

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HDEF_0950 (pilS2_1)	946975..947556 [+], 582	238898121	PilS2 type IV pilus biosynthesis protein
2	HDEF_0951	947596..947895 [-], 300	238898122	addiction module
3	HDEF_0952	947883..948173 [-], 291	238898123	hypothetical protein
4	HDEF_0953 (pilV_1)	948347..949615 [+], 1269	238898124	PilV type IV pilus minor pilin subunit
5	HDEF_0954 (pilM_1)	949665..950096 [+], 432	238898125	PilM type IV pilus biogenesis/secretion protein
6	HDEF_0955	950099..950719 [+], 621	238898126	hypothetical protein
7	HDEF_0956 (pilT_2)	950762..951226 [+], 465	238898127	twitching motility protein PilT
8	HDEF_0957 (traH_1)	951294..951737 [+], 444	238898128	TraH conjugal transfer protein	TraH_I
9	HDEF_0958 (traI_1)	951752..952540 [+], 789	238898129	TraI conjugal transfer protein	TraI_I
10	HDEF_0959 (traJ_1)	952527..953696 [+], 1170	238898130	TraJ conjugal transfer protein	TraJ_I
11	HDEF_0960	953691..954098 [-], 408	238898131	hypothetical protein
12	HDEF_0961	954107..954349 [-], 243	238898132	hypothetical protein
13	HDEF_0962 (traK_1)	954455..954715 [+], 261	238898133	TraK conjugal transfer protein	TraK_I
14	HDEF_0963 (traC_1)	954733..957219 [+], 2487	238898134	DNA primase TraC
15	HDEF_0965 (traL)	957505..957936 [+], 432	238898135	TraL conjugal transfer protein	TraL_I
16	HDEF_0966 (traM_1)	957961..958632 [+], 672	238898136	TraM conjugal transfer protein	TraM_I
17	HDEF_0967 (traN)	958629..959633 [+], 1005	238898137	TraN conjugal transfer protein	TraN_I
18	HDEF_0968 (traO)	959643..960818 [+], 1176	238898138	TraO conjugal transfer protein	TraO_I
19	HDEF_0969	960815..961231 [+], 417	238898139	hypothetical protein
20	HDEF_0970 (traU)	961224..964280 [+], 3057	238898140	TraU conjugal transfer protein	TraU_I
21	HDEF_0971 (traW)	964338..965477 [+], 1140	238898141	TraW conjugal transfer protein	TraW_I
22	HDEF_0972 (traX)	965470..966018 [+], 549	238898142	TraX conjugal transfer protein	TraX_I
23	HDEF_0974	968339..968977 [+], 639	238898143	surface exclusion protein
24	HDEF_0975	969054..969308 [+], 255	238898144	hypothetical protein
25	HDEF_0976	969318..969734 [+], 417	238898145	hypothetical protein
26	HDEF_0977	969808..969993 [+], 186	238898146	hypothetical protein
27	HDEF_0978 (trbA)	970063..971073 [+], 1011	238898147	TrbA conjugal transfer protein	TrbA_I
28	HDEF_0979 (trbB)	971149..972081 [+], 933	238898148	TrbB conjugal transfer protein	TrbB_I
29	HDEF_0980 (trbC_2)	972074..973321 [+], 1248	238898149	TrbC conjugal transfer protein	TrbC_I
30	HDEF_0981	973394..973858 [-], 465	238898150	reverse transcriptase
31	HDEF_0982	974478..976160 [+], 1683	238898151	reverse transcriptase
32	HDEF_0983	976237..977421 [-], 1185	238898152	reverse transcriptase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_012751