SecReT4

T4SS
References

T4SS ID	174
Strain	Pseudomonas syringae pv. tomato str. DC3000
Replicon	plasmid pDC3000A [Browse all T4SS(s) in this replicon]
Accession	NC_004633
Location	43283..71657
Name	Tra_I
Function	NA
Classification	Type IVB; Type I
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	1	1	1	1	1	1
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	1	1	0	1	1	0	1	1	1
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_004633

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PSPTOA0037	39438..40784 [+], 1347	29171511	major facilitator family transporter
2	PSPTOA0038	40825..41010 [+], 186	29171512	hypothetical protein
3	PSPTOA0039	41032..41367 [-], 336	29171513	PbsX family transcriptional regulator
4	PSPTOA0040	41631..42164 [+], 534	29171514	hypothetical protein
5	PSPTOA0041	42480..42752 [+], 273	29171515	putative lipoprotein
6	PSPTOA0042 (pilT)	42755..43246 [+], 492	29171516	pilT protein
7	PSPTOA0043	43283..43756 [+], 474	29171517	traH protein, putative	TraH_I
8	PSPTOA0044 (traI)	43753..44553 [+], 801	29171518	relaxase	TraI_I
9	PSPTOA0045	44550..45731 [+], 1182	29171519	type IV pilus biogenesis protein	TraJ_I
10	PSPTOA0046	46304..46513 [+], 210	29171520	hypothetical protein
11	PSPTOA0047	46510..47061 [+], 552	29171521	endonuclease
12	PSPTOA0048 (traK-2)	47372..47659 [+], 288	29171522	traK protein	TraK_I
13	PSPTOA0049	47811..51980 [+], 4170	29171523	DNA primase, putative
14	PSPTOA0050 (traL-2)	52006..52359 [+], 354	29171524	traL protein	TraL_I
15	PSPTOA0051 (traM-2)	52356..53063 [+], 708	29171525	traM protein	TraM_I
16	PSPTOA0052 (traN-2)	53120..54178 [+], 1059	29171526	traN protein	TraN_I
17	PSPTOA0053 (traO-2)	54184..55542 [+], 1359	29171527	traO protein	TraO_I
18	PSPTOA0054 (traP-2)	55584..56249 [+], 666	29171528	traP protein	TraP_I
19	PSPTOA0055 (traQ-2)	56258..56800 [+], 543	29171529	traQ protein	TraQ_I
20	PSPTOA0056 (traR-2)	56876..57271 [+], 396	29171530	traR protein	TraR_I
21	PSPTOA0057	57315..57590 [-], 276	29171531	hypothetical protein
22	PSPTOA0058	57568..57768 [-], 201	29171532	hypothetical protein
23	PSPTOA0059 (traT)	57953..58612 [+], 660	29171533	traT protein	TraT_I
24	PSPTOA0060 (traU-2)	58596..61643 [+], 3048	29171534	traU protein	TraU_I
25	PSPTOA0061	61667..61903 [+], 237	29171535	hypothetical protein
26	PSPTOA0062 (traW-2)	61946..63160 [+], 1215	29171536	traW protein	TraW_I
27	PSPTOA0063 (traX-2)	63150..63752 [+], 603	29171537	traX protein	TraX_I
28	PSPTOA0064 (traY-2)	63781..65925 [+], 2145	29171538	traY protein	TraY_I
29	PSPTOA0065	66269..66919 [+], 651	29171539	exclusion-determining protein, putative
30	PSPTOA0066 (trbA)	67012..68211 [+], 1200	29171540	trbA protein	TrbA_I
31	PSPTOA0067 (trbB)	68297..69382 [+], 1086	29171541	trbB protein	TrbB_I
32	PSPTOA0068	69369..71657 [+], 2289	29171542	TraG/TraD family conjugal transfer protein	TrbC_I
33	PSPTOA0069	71685..72107 [+], 423	29171543	hypothetical protein
34	PSPTOA0070	72068..72691 [+], 624	29171544	hypothetical protein
35	PSPTOA0071	72879..73307 [+], 429	29171545	GntR family transcriptional regulator

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Zhao Y; Ma Z; Sundin GW (2005). Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J Bacteriol. 187(6):2113-26. [PudMed:15743960]

This literature contains bioinformatics investigation