SecReT4

T4SS
References

T4SS ID	127
Strain	Pantoea sp. At-9b plasmid pPAT9B05 (NC_014842)
Replicon	plasmid pPAT9B05 [Browse all T4SS(s) in this replicon]
Accession	NC_014842
Location	56445..92104
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS is identified in this study.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	1

The information of T4SS components from NC_014842

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pat9b_4051	51474..51863 [+], 390	317052822	hypothetical protein
2	Pat9b_4052	52083..52340 [-], 258	317052823	SET domain containing 1A
3	Pat9b_4053	52582..53358 [+], 777	317052824	hypothetical protein
4	Pat9b_4054	53400..53768 [+], 369	317052825	hypothetical protein
5	Pat9b_4055	53858..54007 [+], 150	317052826	hypothetical protein
6	Pat9b_4056	54004..54573 [+], 570	317052827	hypothetical protein
7	Pat9b_4057	54664..54885 [+], 222	317052828	zinc-containing alcohol dehydrogenase family protein
8	Pat9b_4058	54885..55208 [+], 324	317052829	Zyxin (Zyxin-2)
9	Pat9b_4059	55233..55544 [+], 312	317052830	hypothetical protein
10	Pat9b_4061	56445..56978 [-], 534	317052831	Lytic transglycosylase catalytic	Orf169_F
11	Pat9b_4062	57829..58221 [+], 393	317052832	hypothetical protein
12	Pat9b_4063	58729..59349 [-], 621	317052833	hypothetical protein
13	Pat9b_4064	59561..59953 [+], 393	317052834	TraA family protein	TraA_F
14	Pat9b_4065	59962..60264 [+], 303	317052835	type IV conjugative transfer system protein TraL	TraL_F
15	Pat9b_4066	60316..60915 [+], 600	317052836	TraE family protein	TraE_F
16	Pat9b_4067	60919..61656 [+], 738	317052837	type-F conjugative transfer system secretin TraK	TraK_F
17	Pat9b_4068	61653..63020 [+], 1368	317052838	TraB pilus assembly family protein	TraB_F
18	Pat9b_4069	63039..63551 [+], 513	317052839	NusG antitermination factor
19	Pat9b_4070	63548..63949 [+], 402	317052840	hypothetical protein
20	Pat9b_4071	63960..64433 [+], 474	317052841	hypothetical protein
21	Pat9b_4072	64426..64587 [+], 162	317052842	hypothetical protein
22	Pat9b_4073	64900..65448 [+], 549	317052843	type IV conjugative transfer system protein TraV	TraV_F
23	Pat9b_4074	65448..65735 [+], 288	317052844	hypothetical protein
24	Pat9b_4075	65725..68370 [+], 2646	317052845	type-IV secretion system protein TraC	TraC_F
25	Pat9b_4076	68386..68841 [+], 456	317052846	Type-F conjugative transfer system protein TrbI
26	Pat9b_4077	68838..69458 [+], 621	317052847	type-F conjugative transfer system protein TraW	TraW_F
27	Pat9b_4078	69455..69745 [+], 291	317052848	hypothetical protein
28	Pat9b_4079	69877..70152 [+], 276	317052849	hypothetical protein
29	Pat9b_4080	70307..70648 [+], 342	317052850	hypothetical protein
30	Pat9b_4081	70645..71637 [+], 993	317052851	TraU family protein	TraU_F
31	Pat9b_4082	71647..72270 [+], 624	317052852	type-F conjugative transfer system pilin assembly protein TrbC	TrbC_F
32	Pat9b_4083	72267..74105 [+], 1839	317052853	conjugal transfer mating pair stabilization protein TraN	TraN_F
33	Pat9b_4084	74105..74902 [+], 798	317052854	type-F conjugative transfer system pilin assembly protein TraF	TraF_F
34	Pat9b_4085	74913..75383 [+], 471	317052855	hypothetical protein
35	Pat9b_4086	75380..75592 [+], 213	317052856	major facilitator superfamily MFS_1
36	Pat9b_4087	75582..76208 [+], 627	317052857	conjugal transfer protein TrbB
37	Pat9b_4088	76244..76558 [+], 315	317052858	hypothetical protein
38	Pat9b_4089	76555..77922 [+], 1368	317052859	TraH family protein	TraH_F
39	Pat9b_4090	77915..81028 [+], 3114	317052860	TraG domain-containing protein	TraG_F
40	Pat9b_4091	81050..81625 [+], 576	317052861	hypothetical protein
41	Pat9b_4092	81755..82486 [+], 732	317052862	TraT complement resistance family protein
42	Pat9b_4093	82572..82886 [+], 315	317052863	hypothetical protein
43	Pat9b_4094	83218..83526 [+], 309	317052864	hypothetical protein
44	Pat9b_4095	83649..86291 [+], 2643	317052865	type IV conjugative transfer system coupling protein TraD	TraD_F
45	Pat9b_4096	86288..92104 [+], 5817	317052866	conjugative transfer relaxase protein TraI	TraI_F
46	Pat9b_4097	92176..92973 [+], 798	317052867	DSBA oxidoreductase
47	Pat9b_4098	93725..94666 [+], 942	317052868	replication initiation protein
48	Pat9b_4099	95389..95601 [+], 213	317052869	hypothetical protein
49	Pat9b_4100	95573..96157 [+], 585	317052870	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_014842