SecReT4

T4SS
References

T4SS ID	126
Strain	Pantoea sp. At-9b plasmid pPAT9B02 (NC_014839)
Replicon	plasmid pPAT9B02 [Browse all T4SS(s) in this replicon]
Accession	NC_014839
Location	65..8490; 228257..229033; 366626..391496
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS is identified in this study.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	1
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	1

The information of T4SS components from NC_014839
Region 1: 65..8490

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pat9b_4721	65..2677 [+], 2613	317053480	type IV conjugative transfer system coupling protein TraD	TraD_F
2	Pat9b_4722	2674..8490 [+], 5817	317053481	conjugative transfer relaxase protein TraI	TraI_F
3	Pat9b_4724	9273..9710 [-], 438	317053482	Glyoxalase/bleomycin resistance protein/dioxygenase
4	Pat9b_4725	9883..10797 [+], 915	317053483	Integrase catalytic region
5	Pat9b_4726	11246..11500 [-], 255	317053484	hypothetical protein
6	Pat9b_4727	11692..12030 [+], 339	317053485	putative DNA-damage-inducible protein J
7	Pat9b_4728	12015..12326 [-], 312	317053486	hypothetical protein

Region 2: 228257..229033

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pat9b_4952	223350..224153 [+], 804	317053674	polar amino acid ABC transporter, inner membrane subunit
2	Pat9b_4953	224146..224889 [+], 744	317053675	ABC transporter-like protein
3	Pat9b_4954	224904..225995 [+], 1092	317053676	FAD dependent oxidoreductase
4	Pat9b_4955	226595..227197 [+], 603	317053677	Cupin 2 conserved barrel domain-containing protein
5	Pat9b_4956	227709..228074 [+], 366	317053678	histone family protein nucleoid-structuring protein H-NS
6	Pat9b_4957	228257..229033 [+], 777	317053679	TraX family protein	TraX_F
7	Pat9b_4958	229030..229920 [-], 891	317053680	metallophosphoesterase
8	Pat9b_4959	229933..230727 [-], 795	317053681	binding-protein-dependent transport systems inner membrane component
9	Pat9b_4960	230724..231635 [-], 912	317053682	binding-protein-dependent transport systems inner membrane component
10	Pat9b_4961	231635..232912 [-], 1278	317053683	extracellular solute-binding protein family 1

Region 3: 366626..391496

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pat9b_5088	361736..362203 [-], 468	317053778	hypothetical protein
2	Pat9b_5089	362366..362710 [+], 345	317053779	hypothetical protein
3	Pat9b_5090	362697..363068 [+], 372	317053780	IS66 Orf2 family protein
4	Pat9b_5091	363095..364690 [+], 1596	317053781	transposase IS66
5	Pat9b_5092	364762..365007 [-], 246	317053782	hypothetical protein
6	Pat9b_5093	365414..365725 [+], 312	317053783	hypothetical protein
7	Pat9b_5094	365782..366603 [+], 822	317053784	hypothetical protein
8	Pat9b_5095	366626..367159 [-], 534	317053785	Lytic transglycosylase catalytic	Orf169_F
9	Pat9b_5096	368009..368401 [+], 393	317053786	hypothetical protein
10	Pat9b_5097	368773..369459 [-], 687	317053787	hypothetical protein
11	Pat9b_5098	369671..370063 [+], 393	317053788	TraA family protein	TraA_F
12	Pat9b_5099	370072..370374 [+], 303	317053789	type IV conjugative transfer system protein TraL	TraL_F
13	Pat9b_5100	370426..371025 [+], 600	317053790	type IV conjugative transfer system protein TraE	TraE_F
14	Pat9b_5101	371029..371766 [+], 738	317053791	type-F conjugative transfer system secretin TraK	TraK_F
15	Pat9b_5102	371763..373130 [+], 1368	317053792	TraB pilus assembly family protein	TraB_F
16	Pat9b_5103	373149..373661 [+], 513	317053793	NusG antitermination factor
17	Pat9b_5104	373658..374032 [+], 375	317053794	hypothetical protein
18	Pat9b_5105	374086..374559 [+], 474	317053795	hypothetical protein
19	Pat9b_5106	374552..374734 [+], 183	317053796	hypothetical protein
20	Pat9b_5107	374772..375008 [+], 237	317053797	hypothetical protein
21	Pat9b_5108	375165..375713 [+], 549	317053798	type IV conjugative transfer system protein TraV	TraV_F
22	Pat9b_5109	375713..375991 [+], 279	317053799	hypothetical protein
23	Pat9b_5110	375981..378620 [+], 2640	317053800	type-IV secretion system protein TraC	TraC_F
24	Pat9b_5111	378636..379082 [+], 447	317053801	type-F conjugative transfer system protein TrbI
25	Pat9b_5112	379079..379699 [+], 621	317053802	type-F conjugative transfer system protein TraW	TraW_F
26	Pat9b_5113	379696..379986 [+], 291	317053803	hypothetical protein
27	Pat9b_5114	380158..380499 [+], 342	317053804	hypothetical protein
28	Pat9b_5115	380496..381488 [+], 993	317053805	TraU family protein	TraU_F
29	Pat9b_5116	381498..382124 [+], 627	317053806	type-F conjugative transfer system pilin assembly protein TrbC	TrbC_F
30	Pat9b_5117	382121..383959 [+], 1839	317053807	conjugal transfer mating pair stabilization protein TraN	TraN_F
31	Pat9b_5118	383959..384756 [+], 798	317053808	type-F conjugative transfer system pilin assembly protein TraF	TraF_F
32	Pat9b_5119	384767..385237 [+], 471	317053809	hypothetical protein
33	Pat9b_5120	385234..385446 [+], 213	317053810	hypothetical protein
34	Pat9b_5121	385436..386062 [+], 627	317053811	conjugal transfer protein TrbB
35	Pat9b_5122	386098..386403 [+], 306	317053812	hypothetical protein
36	Pat9b_5123	386415..386930 [+], 516	317053813	AAA ATPase
37	Pat9b_5124	387005..388372 [+], 1368	317053814	TraH family protein	TraH_F
38	Pat9b_5125	388365..391496 [+], 3132	317053815	TraG domain-containing protein	TraG_F
39	Pat9b_5126	391523..392092 [+], 570	317053816	hypothetical protein
40	Pat9b_5127	392221..392952 [+], 732	317053817	TraT complement resistance family protein
41	Pat9b_5128	393037..393351 [+], 315	317053818	hypothetical protein
42	Pat9b_5129	393688..393996 [+], 309	317053819	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_014839