| Protein ID: 134044512 |
 T4SS name [ID] | Tra_F [587] |
| Gene symbol | traD |
| Locus tag | YR71pYR1_0074 |
| Strain | Yersinia ruckeri plasmid pYR1 (NC_009139) |
| Replicon | plasmid pYR1 [GenBank: NC_009139] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 52798..54663 [+] |
| Product | type IV conjugative transfer system protein TraD |
| Component type | TraD_F |
| UniProt ID | A4IUA2 |
| KEGG ID | NA |
| PDB ID | NA |
| Domain hit(s) vs Pfam | AAA_10 [PF12846], Evalue: 3e-19, Aligned region: 173..549 TrwB_AAD_bind [PF10412], Evalue: 2.7e-17, Aligned region: 167..211 TrwB_AAD_bind [PF10412], Evalue: 2.7e-17, Aligned region: 469..609 TraG-D_C [PF12696], Evalue: 4.1e-13, Aligned region: 471..595 DUF87 [PF01935], Evalue: 1e-06, Aligned region: 173..211 FtsK_SpoIIIE [PF01580], Evalue: 1.2e-05, Aligned region: 168..211 |
| Protein Sequence: 621 a.a. [Download] |
| >gi|134044512|ref|YP_001101768.1| type IV conjugative transfer system protein TraD [Yersinia ruckeri] MTMSYDPLAYEMPWRPNYEKNAVAGWLAASGAALAVEQVSTMPPEPFYWMTGICGVMAMARLPKAIKLHL LQKHLKGRDLEFISIAELQKYIKDTPDDMWLGSGFLWENRHAQRVFEILKRDWTSIVGRESTVKKVVRKI QGKKKELPIGQPWIHGVEPKEEKLMQPLKHTEGHSLIVGTTGSGKTRMFDILISQAILRGEAVIIIDPKG DKEMRDNARRACEAMGQPERFVSFHPAFPEESVRIDPLRNFTRVTEIASRLAALIPSEAGADPFKSFGWQ ALNNIAQGLVITHDRPNLTKLRRFLEGGAAGLVIKAVQAYSERVMPDWEAEAAAYLEKAKNGSREKIAFA LMKFYYDIIQPEHPNSDLEGLLSMFQHDQTHFSKMVANLLPIMNMLTSGELGPLLSPDSSDLSDERQITD SAKIINNAQVAYLGLDSLTDNMVGSAMGSIFLSDLTAVAGDRYNYGVNNRPVNIFVDEAAEVINDPFIQL LNKGRGAKLRLFVATQTFADFAARLGSKDKALQVLGNINNTFALRIVDGETQEYIADNLPKTRLKYVMRT QGQNSDGKEPIMHGGNQGERLMEEEADLFPAQLLGMLPNLEYIAKISGGTIVKGRLPILTQ |
| Nucleotide Sequence: 1866 bp [Download] |
| >gi|134044452|ref|NC_009139.1|:52798-54663 Yersinia ruckeri YR71 plasmid pYR1, complete sequence ATGACAATGAGTTATGACCCGCTCGCCTACGAGATGCCGTGGCGGCCCAACTATGAAAAAAATGCTGTAG CAGGCTGGCTTGCCGCCTCCGGCGCGGCTTTGGCCGTAGAGCAAGTCAGCACGATGCCGCCGGAGCCATT CTATTGGATGACGGGGATCTGTGGCGTGATGGCGATGGCTCGTTTGCCCAAGGCTATCAAACTTCACCTG CTCCAAAAGCATTTGAAGGGGCGTGATCTGGAGTTTATTTCCATTGCGGAGCTCCAAAAGTACATCAAGG ACACGCCGGACGATATGTGGCTTGGTAGTGGGTTCCTGTGGGAAAACCGCCATGCCCAGCGCGTGTTTGA GATCCTGAAACGCGACTGGACTTCCATCGTAGGGAGAGAGTCCACGGTCAAAAAGGTTGTCCGGAAGATA CAGGGTAAGAAAAAGGAGCTGCCAATCGGCCAGCCCTGGATTCACGGGGTAGAGCCCAAAGAAGAGAAGC TGATGCAGCCACTCAAGCACACTGAGGGGCATTCGCTGATCGTTGGGACCACCGGCTCGGGCAAGACCCG TATGTTCGACATCCTGATTTCACAGGCCATTCTGCGTGGGGAAGCCGTGATCATCATAGACCCGAAAGGG GATAAGGAGATGCGGGACAATGCCCGACGTGCCTGTGAAGCTATGGGGCAGCCGGAAAGATTCGTCTCAT TTCATCCAGCATTCCCGGAAGAGTCGGTGCGTATCGACCCTCTGCGTAACTTCACCCGCGTGACTGAAAT CGCAAGTCGTTTGGCAGCGTTGATCCCGTCCGAAGCAGGGGCCGACCCGTTCAAATCATTTGGATGGCAG GCACTGAACAACATCGCTCAGGGCTTGGTCATCACTCATGATCGTCCCAACCTGACAAAGCTCCGCCGAT TCCTTGAAGGTGGCGCTGCTGGCTTGGTCATCAAGGCCGTTCAGGCTTACTCAGAGCGAGTTATGCCCGA CTGGGAGGCAGAAGCAGCGGCTTACTTGGAAAAAGCCAAAAACGGTTCGCGTGAGAAGATCGCTTTCGCG TTGATGAAGTTCTACTACGACATCATCCAACCTGAGCACCCGAACTCTGACCTGGAAGGCTTGCTGTCGA TGTTCCAGCACGACCAAACCCACTTCTCCAAGATGGTGGCGAACCTCCTGCCGATCATGAATATGCTGAC GTCCGGGGAGCTAGGCCCTCTGCTGTCTCCAGACTCATCTGATCTGAGCGACGAACGCCAGATCACCGAT TCCGCAAAAATCATCAACAACGCTCAAGTTGCTTATCTGGGGCTCGACTCCCTGACCGACAACATGGTTG GTAGTGCTATGGGGTCCATCTTCCTGTCAGACCTGACAGCGGTTGCCGGTGACAGATACAACTACGGCGT CAACAACAGACCCGTAAATATCTTTGTTGATGAGGCTGCCGAGGTGATCAACGACCCGTTCATCCAGCTC CTGAACAAAGGTCGCGGTGCGAAACTTCGTCTTTTCGTTGCAACTCAGACTTTTGCTGACTTCGCAGCTC GACTGGGTAGCAAAGACAAAGCGCTCCAGGTGTTGGGGAACATCAACAACACGTTTGCTCTGCGTATCGT CGATGGTGAAACCCAGGAGTATATCGCGGATAACCTGCCGAAGACCCGGCTCAAGTACGTCATGCGGACT CAAGGCCAGAACTCGGATGGCAAGGAGCCCATTATGCACGGAGGCAACCAAGGCGAGCGTTTGATGGAGG AGGAAGCTGATCTGTTCCCAGCCCAGTTATTGGGAATGCTTCCGAACCTGGAATACATAGCCAAAATTTC AGGCGGAACAATCGTAAAAGGCCGTCTGCCCATATTGACCCAGTAA |