oriTDB
The information of the oriT region
oriTDB accession number 200012
Name oriT_ ICEEc1  insolico
Sequence Completeness intact
oriT length 250 nt
oriT sequence GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGC GACCAACCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTA AACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCCTTTGACCC TGGGGGTTTTGGCGTGGCGTCCAGCCGCGACATTACCCCCATGCGACAGGCAATAAGGGC GTCCAGCCCG
IR (inverted repeat)[1-13] [156-168] nt  (GCACACCGTCGCA..TGCGACGGTGTGC)
[57-75] [131-149] nt  (GCGCGACCAACCCCTTTAA..TTAAAGGGGTTGGTCGCGC)
Location of nic site [142-143] nt
Conserved sequence flanking the
  nic site
GGTTG|GTCGCG
Note _
L:1-13;R:156-168;L:57-75;R:131-149;D:142-143
Visualization of oriT structure
Reference
[1] Lin TL et al (2008) Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess. J Bacteriol. 190(2):515-26. [PMID:17981959]
[2] Marcoleta AE et al (2016) Klebsiella pneumoniae Asparagine tDNAs Are Integration Hotspots for Different Genomic Islands Encoding Microcin E492 Production Determinants and Other Putative Virulence Factors Present in Hypervirulent Strains. Front Microbiol. 0.88125. [PMID:27375573]
 N/A
 N/A
Information of mobile element
ID 17
Element type ICE (Conjugative transposon);high-pathogenicity island
ICE description ICEEc1
ICEberg accesion number 70
GenBank accession number AY233333.1
Family ICEKp1
Genome size 40365 bp
Coordinate of oriT  [+/-] 17654..17903 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico high-pathogenicity island
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli ECOR31 [562]
Reference
[1] Schubert S et al (2004) A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol Microbiol. 51(3):837-48. [PMID:14731283]
[2] Lin TL et al (2008) Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess. J Bacteriol. 190(2):515-26. [PMID:17981959]
[3] Marcoleta AE et al (2016) Klebsiella pneumoniae Asparagine tDNAs Are Integration Hotspots for Different Genomic Islands Encoding Microcin E492 Production Determinants and Other Putative Virulence Factors Present in Hypervirulent Strains. Front Microbiol. 0.88125. [PMID:27375573]