oriTDB

The information of the oriT region

oriTDB accession number	200004
Name	oriT_ICESt1
Sequence Completeness	intact
oriT length	213 nt
oriT sequence	GCCTGACCACAGGTCAGGCGCAGACCGTAGCCCGAAGTTCCTAGGCCATGATGAAACTTC AACCCCCGTTTTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTC ATTCCTTGTGGGAGTTGGGATTTCAAGATTTAGAAAGTGTGTCACTTTGGTCCAAAAAGT GTGTCACTTAGTCAAAAGGAGGTGTTCCCATGA
IR (inverted repeat)	[1-8] [12-19] nt (GCCTGACC..GGTCAGGC) [61-67] [80-86] nt ( AACCCCC..GGGGGTT) [154-159] [163-168] nt ( AAAGTG..CACTTT) [177-181] [185-189] nt ( AAGTG..CACTT)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:1-8;R:12-19;L:61-67;R:80-86;L:154-159;R:163-168;L:177-181;R:185-189

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GCCTGACCACAGGTCAGGCGCAGACCGTAGCCCGAAGTTCCTAGGCCATGATGAAACTTC

61

AACCCCCGTTTTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTC

121

ATTCCTTGTGGGAGTTGGGATTTCAAGATTTAGAAAGTGTGTCACTTTGGTCCAAAAAGT

181

GTGTCACTTAGTCAAAAGGAGGTGTTCCCATGA

Reference

[1] Pavlovic G et al (2004) Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PMID:15073287]

N/A

Information of mobile element

ID	9
Element type	ICE (Conjugative transposon)
ICE description	ICESt1
ICEberg accesion number	78
GenBank accession number	AJ278471.1
Family	ICESt1
Genome size	36272 bp
Coordinate of oriT [+/-]	24659..24871 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Streptococcus thermophilus CNRZ368 [1308]

Reference

[1] Pavlovic G et al (2004) Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PMID:15073287]