oriTDB
The information of the oriT region
oriTDB accession number 100980
Name oriT_p1315K-1  insolico
Sequence Completeness intact
oriT length 89 nt
oriT sequence GCTCCTTACCGGGGTGTCGGGGCGAAGCCCTGACCAGGTGGTAAATGTATGGCCGCGCGT GCGCGGTTATACATTTACACATCCTGTCC
IR (inverted repeat)IR1: [16-23] [27-34] nt  (GTCGGGGC..GCCCTGAC)
IR2: [41-58] [61-78] nt  (GTAAATGTATGGCCGCGC..GCGCGGTTATACATTTAC)
Location of nic site [86-87] nt
Conserved sequence flanking the
  nic site 		CATCCTG|T
Note predicted by the oriTfinder
L:16-23;R:27-34;L:41-58;R:61-78;D:86-87
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1050
Name NikB_p1315K-1 insolico
GenBank accession number WP_080227073
Family MOBP
Length 899 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.80E-54, Aligned region: 61..315
Note putative relaxase
Protein sequence [Download] MNGIIPKKRRDGKSSFEDLVSYVSVRDDLEDEELQALSSVQSLLSHRSRFSRLVDHATRL
RDESFVSLVDVMKDGCEWVNFYGVTCFHNCTSLETAAEEMEYTARQARYAKDDTDPVFHY
ILSWQSHESPRPEQIYDSVRHTLKALGLSSHQYVSAVHTDTDNLHVHVAVNRVHPDTGYL
NCLSWSQEKLSRACRELELKHGFAPDNGCWIHAPGCRIVRKTAAERDRQNAWTRGKKQTF
REYVSQTAVAGLRSEPVHDWLSLHRRLAEDGLYLTLQNGSFMVMDGWDRSREGVQLDSFG
PSWNGDKLRKKMGEYTPVPKDIFSQVGAPGRYKPEVIAADTRPEKMAETVNLMQYACRHL
GDRLPEMAREGKLESCLDIHRTLAEAGLWMRIQHGHLVICDGSDHNQTPVRADSVWPLLT
PENVNQLDGGWQPVPDDIFRQVTPAERFSGRRLESCPASDREWHRMRTGPGPQGAIRREL
FSDKESLWGYSISHCSPQIEEMITRGEFTWHHCHELFARQGLMLQRQHHGLVVVDAFNHE
QTPVKASSIHPDLTLERAEPQAGPFVSAPADLFDRVKPESRYNPELAVSDQSPEDCRRDP
VLRRQRREARAEARAELRARYLAWREHWRKPELRYGERSREIHQACRLRKSHIRVQYDDP
VLRKLHYHIAEVQRMQALIRLKEEVRDERQKLIAEGKWYPPSYRQWVKAQAVQGDRAAVS
QLRGWDYRDRRKDKSRTTTADRCVILCEPGGTPVYENRGDLEARLQKNGSVRFRDRRTDQ
FVCTDYGDRVVFHNHHDRNELADKLDLIAPVLFERDPRMGFEPEGNDRQFNQVFAEMVAW
HNVTERTGHGDYTISRPDVDHHREGSERYYRSYINAHAGCDRAPRFQEDEKGWEPPTPV
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1438
Plasmid name p1315K-1
GenBank accession number NZ_CP022140.1
Incompatibility group IncFIB(S)
Genome size 109681 bp
Coordinate of oriT  [Strand] 62236..62324 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica 1315K [1243602]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU