oriTDB
The information of the oriT region
oriTDB accession number 100970
Name oriT_pM270-accessoryB  insolico
Sequence Completeness core
oriT length 50 nt
oriT sequence TCCAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTGCTCAGAGGGCC
IR (inverted repeat)[19-24] [29-34] nt  (CGTCGC..GCGACG)
Location of nic site [8-9] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:19-24;R:29-34;D:8-9
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1040
Name TraA_pM270-accessoryB insolico
GenBank accession number WP_088199054
Family MOBQ
Length 1100 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.60E-75, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 3.70E-55, Aligned region: 381..569
AAA_19 [PF13245.5], Evalue: 5.60E-10, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 0.00016, Aligned region: 656..737
Note putative relaxase
Protein sequence [Download] MAIAHFSASIVSRGGGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFVLPGDAP
KWVKALIADRLVSGAVEAFWNKVEAFEKRADAQLARDLTIALPLELTPEQNIALVRDFAE
KHILTKGMVADWVYHDNPGNPHIHLMTTLRPLTGDGFGSKKVAVIGEDGQPVRTKSGKIL
YQLWAGSTDDFNALRDGWFERLNHHLALGGIDLRIDGRSYEKQGIDLEPTIHLGVGAKAI
ERKAQEQGVRPELERIELNEQRRSENTRRILNNPAIVLDLITREKSVFDERDVAKVLHRY
VDDPTVFQQVMLRIILNPEVLRLQRDTIEFATGEKVPACYSTRAMIRLEATMVRQALWLS
NRDGHAVSEAALDATFRRHERLSQEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAAREA
WELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWNRARDVLDDKTVFVMDEAGMV
ASRQMAGFVDAVVRAGAKIVVVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWM
RKASLDLARGNVEKALTAYDANVRITGTRLKAEAVERLIGDWNHDYDQTKTTLILAHLRR
DVRMLNVMARKKLVERGIVGEGHVFKTADGIRQFDAGDQIVFLKNETSLGVKNGMIAHVI
EAAPNRIVAVVGEGDQRRQVIVEQRFYSNLDHGYATTIHKSQGATVDRVKVLASLSLDRH
LTYVAMTRHREDVQLYYGRRSFAFNGGLAKVLSRRNAKETTLDYERGKLHREALRFAESR
GLNIVQVARTLVRDRLDWTLRQKMKLVELGQRLAVFAERLGLHHPLKTQTMKEAAPMVAG
IKTFSGSVADTVEQKLDTDPALRKQWQEVSARFAYVFADPETAFRAMNFDAVLTEKDTAR
QVVQKLEAEPASIGPLRGKTGILASKAERESRRIAEINVPALKRDLEQYLRMREAAIKRL
STDEQVQRQRVSIDIPALSPAAHVVLERVRDAIDRNDLPAALGYALSNRETKLEIDGFNK
AVTERFGERTLLTNAARQPSGTLFDKLSNGMQPEQKERLKEAWPVMRTAQQIAAHERTTQ
TLKQAEELRLTQRQSPVMKQ
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1428
Plasmid name pM270-accessoryB
GenBank accession number NZ_CP021816.1
Genome size 203845 bp
Coordinate of oriT  [Strand] 36143..36192 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Sinorhizobium meliloti M270 [382]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU