oriTDB
The information of the oriT region
oriTDB accession number 100939
Name oriT_pGeo12b  insolico
Sequence Completeness core
oriT length 34 nt
oriT sequence GTGCCCATTTATACCCCTTTCAGGGGTAAATGGG
IR (inverted repeat)[4-18] [22-34] nt  (CCCATTTATACCCCT..AGGGGTAAATGGG)
Location of nic site [2-3]nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:4-18;R:22-34;D:2-3
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1009
Name Nickase_pGeo12b insolico
GenBank accession number WP_087960466
Family MOBQ
Length 629 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 4.10E-70, Aligned region: 18..225
Note putative relaxase
Protein sequence [Download] MTMAYFLFRTQIISKSNRSSVACAAYRSGEALYSERDGLTKKYGHRDIPPETYILAPKHA
PDWVYNRERLWNEVEKVEKQHNAQLAREIIVALPTQLTNEEQTQLLLDFCKENFSDEGMV
ADIAIHRDKKHNPHAHIMLTMRPFNEDGTWGQKRKKVNGKSVHLTNWNDKETLLKWRKNF
ADRINEKFKEKGINDRVSHESYEKQGIDKVPQIRLSREAYQYEQRMKREAEKQGKPYEPV
TYYGKLNQEIQRINQELKALKQQEKVVSISEYQEEKSLNETIESIRKNASLNDVEKASLL
LVAKRAKSYVDFAVARRVYHDLAEGNWKKKIDSQQLKLRALKNVINKAYHVYQQEPKQVI
QYGFHPGKFNEQLREKIAQLKEMEKSFENELTKYEAVLKKAELALEVQKRLTEEEFRVLY
PHAGADFRIEEKHHAVQYFKDTGGVLPESEIPAYAAKKEQEIHRMPTFAEQTRNMYQSLF
VLNRTIQKQSKERMEALKARDFEQAFEASRKIEQCMLRKEKMSKELEENKAVLQAILSEH
YGRDVSITNTAALLRLHELVERGESSKDFEADLRRIHVSEQQKLERMPKPETEAQIMEYQ
YRQHVADGLLEAIEEAVKNLNAKGERKSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1397
Plasmid name pGeo12b
GenBank accession number NZ_CP020032.1
Genome size 56976 bp
Coordinate of oriT  [Strand] 1922..1955 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Geobacillus thermodenitrificans T12 [33940]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU