oriTDB
The information of the oriT region
oriTDB accession number 100934
Name oriT1_pASM3  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATATTGGCACGGATGCGAATATCAGTGAAGTGCTTCATCTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1005
Name Putative relaxase of pASM3 insolico
GenBank accession number WP_045282379
Family MOBP
Length 501 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.90E-15, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPAGLPKTKQEAAEAITRGLLS
LASSGELKSRQDVTEALEGAGFEVVCTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRRHQRPRAEYERGDGEKPAERV
ADGREDMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGENDRPDVGSALSG
EQRRPEVSYPAAGDASRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWSYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIEEKAALEYQR
QNELELTLRQKQKSFDGPKMR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1393
Plasmid name pASM3
GenBank accession number NZ_CP019842.1
Genome size 11748 bp
Coordinate of oriT  [Strand] 222..395 [-]; 7034..7207 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae R11 [550]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU