oriTDB
The information of the oriT region
oriTDB accession number 100932
Name oriT_pRi2659  insolico
Sequence Completeness core
oriT length 32 nt
oriT sequence AGGGCGCAATTATACGTCGCTCACGCGACGCC
IR (inverted repeat)[15-20] [25-30] nt  (CGTCGC..GCGACG)
Location of nic site [4-5] nt
Conserved sequence flanking the
  nic site 		AGGG|CGCA
Note predicted by the oriTfinder
L:15-20;R:25-30;D:4-5
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 1003
Name TraA_pRi2659 insolico
GenBank accession number WP_012475990
Family MOBQ
Length 1108 aa
UniProt ID A8W094
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.70E-76, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.10E-59, Aligned region: 386..573
AAA_19 [PF13245.5], Evalue: 2.70E-13, Aligned region: 391..518
Viral_helicase1 [PF01443.17], Evalue: 8.90E-05, Aligned region: 662..742
AAA_22 [PF13401.5], Evalue: 7.80E-07, Aligned region: 396..516
UvrD_C_2 [PF13538.5], Evalue: 1.50E-06, Aligned region: 697..741
Note putative relaxase
Protein sequence [Download] MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEYEREARTIDYTRKLGLLHEEFVIPADSP
EWVRSMIADRSVAGASEAFWNKVEAFEKRSDAQLAKDVTIALPLELTSEQNIALMRDFVE
RHITAKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGSKKVAVLGRDGKPIRNDAGKIV
YDLWAGSTEDFNAFRDGWFACQNKHLALAGLDIRIDGRSFEKQGIDLEPTIHLGVGAKAI
ERKAEQSDGKQETAPPKLERIELQEARRSENARRIQRRPEIVLELITREKSVFDERDVAK
VLYRYIDDARLFQSLMVRILQSPEALRLERERMNLATGVRELAKYTTREMIRLEAEMANR
AIWLSARASHGVREAVLQATFARHSRLSDEQRTAIEHVAGGERIAAVIGRAGAGKTTMMK
AAREAWEAAGYRVVGIALAGKAAEGLEKEAGIPSRTLSSWELRWNQGRNQLDNKTVIVLD
EAGMVSSRQMALLVETVTKAGAKLVLVGDPEQLQPIEAGAAFRAIAARIGYAELETIYRQ
RQQWMRDASLDLARGNIRKAVDAYTAHGRMIGLRLKDEAVESLIAAWDRDYDPSKTSLIL
AHLRRDVRMLNDMARAKLVERGVVAEGFAFKTEDGHRKFAPGDQIVFLKNEGSLGVKNGM
LAKVLKAAPGRVVAEVGEGEHRRQVTIEQRFYNNLDHGYATTIHKSQGATVDRVKVLASL
SLDRHLTYVAMTRHREDLAVYYGSRSFAKSGGLIPILSRRNAKETTLDYEQASFYRQALR
FAEARGLHLMNVARAVARDRLEWTIRQKQKLVGLGARLAAIATKLGFVGNFKNSPIQNPI
KEAKPMVSGITTFPKSFEQAVEDKLAADPGLKKQWEDVSTRFHLVYAQPEAAFKAINVDA
MVKDQSVAKSTLAKVADAPESFGTLKGKPGLLASRAEKQDREKAIANVPALGRNLERYLR
ERAEAELKHETEERAVRLKVSVDIPALSPAAKQMLERVRDAIDRNDLPAGLEYALADKMV
KAELEGFAKAVSERFGERTFLPLAAKDTNGKAFETVTAGMTAGQKAEVQSAWNSMRTVQQ
LAAHERTTEALKQAETLRQTKSQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1391
Plasmid name pRi2659
GenBank accession number NZ_CP019703.2
Genome size 202292 bp
Coordinate of oriT  [Strand] 116298..116329 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Agrobacterium rhizogenes K599 [359]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU