oriTDB
The information of the oriT region
oriTDB accession number 100885
Name oriT_pKp_Goe_917-5  insolico
Sequence Completeness intact
oriT length 177 nt
oriT sequence GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA GTATGTTACGGCGAGATGGAGATTCGGGGAAGTGCTTCATGTGGCAAGGGGGAAAATACG GCTGCGGGGCGTAAGTGCAAAATGCAGGTAACGATGAAATGACGCCTCCTCGCTCAC
IR (inverted repeat)[5-12] [16-23] nt  (TTCGGGGC.. GCCCTGAA)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:5-12;R:16-23;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 956
Name Nuclease_pKp_Goe_917-5 insolico
GenBank accession number WP_073545626
Family MOBP
Length 508 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.20E-15, Aligned region: 49..247
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRL
QPYYDRADRPRIDAWQTVVNGRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLM
LASSGELKTRDDVTGALTAAGFEVVRTTKNSISIADPDGGRNIRLRGAIYEQSFNGLEGL
RGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRRHQRPRTGDERGDAVEPAERA
ANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAERYAVETAHADVGRDLSG
EPQRTVSGAAGGDESRNGPDGGQQDAERGEAGTGVEQNDGTGKTIVERVRAATAGLLEKA
GRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAAPVIDRLNEIEQQRYGQT
TEKEPEKTADLVPERQRTLSHGDREYGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1344
Plasmid name pKp_Goe_917-5
GenBank accession number NZ_CP018444.1
Genome size 5234 bp
Coordinate of oriT  [Strand] 3776..3952 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella pneumoniae Kp_Goe_822917 [573]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU