oriTDB
The information of the oriT region
oriTDB accession number 100854
Name oriT_p22495-1  insolico
Sequence Completeness intact
oriT length 259 nt
oriT sequence GCAGCGCCCCCAGGGGTGTTACTTAAAAACAGGCACAGCGACGCTAGCAGCGCCCCTGAT ATAATGCAATGTTTTTTATAAAAATAGTCAGTACTACCCCTGTATAGCGTCGTCATAGCG GTGCCGGCGACGTGCCTGCACCGCTATTTAATACATTAAAATAAATTAAATTACATTATT ATGAACATAACTCACTGTTACTAAAAACAAATCAGAAAAATTTTAATTTTGCGTGGGGTG TGGTGCTTTTGGTGGTGAG
IR (inverted repeat)[115-128] [134-147] nt  (ATAGCGGTGCCGGC..GCCTGCACCGCTAT)
Location of nic site [241-242] nt
Conserved sequence flanking the
  nic site 		GTGGGGTGT|GG
Note predicted by the oriTfinder
L:115-128;D:134-147;D:241-242
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 926
Name TraI_p22495-1 insolico
GenBank accession number WP_078164433
Family MOBF
Length 1685 aa
UniProt ID _
PDB ID _
Pfam TrwC [PF08751.10], Evalue: 1.20E-76, Aligned region: 10..284
TraI [PF07057.10], Evalue: 3.90E-37, Aligned region: 1378..1486
AAA_30 [PF13604.5], Evalue: 1.10E-34, Aligned region: 931..1127
AAA_19 [PF13245.5], Evalue: 4.90E-09, Aligned region: 936..1071
Note putative relaxase
Protein sequence [Download] MMSIAQVRSAGSAAGYYSDRDNYYVLGSMEERWAGKGAEQLGLQGTVDKEVFTRVLEGRL
PDGADLSRQQDGGNKHRPGYDLTFSAPKSVSLMAMLAGDKRLTEAHNQAVDIAVRQVEAL
ASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVVNVTQHDGEWKTLSSDKV
GKTGFIENVYANQIAFGKIYRAVLKEKVEALGYETEVVGKHGMWEMPGVPVEAFSSRSQA
IREAVGEDASLKSRDVAALDTRKSKQHVDPEVKMAEWMQTLKDTGFDISAYRESADRRAE
IQAAQPVPSQEQPDIQQAVTQAIAGLSDRKVQFTYTDVLARTVGMLPPEAGVIEKARAGI
DEAISREQLIPLDREKGLFTSGIHVLDELSVRALSSDIMKQNRVTVHPEKSVPRTGSYSD
AVSVLAQDRPSLAIISGQGGAAGQRERVAELTMMAREQGREVQIIVADRRSQTNLKQDER
LSGELITGRRQLQEGMLFSPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRT
GTGSALMAMKEAGVNSYRWQGRQQTPATVISEPDRNVRYARLAGDFVAAVKAGEESVAQV
SGMREQAILAGMIRSELKTQGILGQQDTMMTALSPVWLDSRNRLTLRDAQGETQMVRISA
LDSSWSLFRPEKMPVADGERLMVTGKIPGLRVSVGDRLQVSAVNDGVMTVTVPGRAEPAS
LPVGDSPFTALKLENGWVETPGHSVSDSAKVFASVTQMAMDNATLNSLARSGRDVRLYSS
LDGTRTAEKLSRHPSFTVVSEQIKARAGEVSLETAISRQKAGLHTPAQQAIHLALPVVES
KNLAFSQVDLLTEAKSFAAEGTGFADLGREIDAQIKRGDLLYVDVAKGYGTDLLISRASY
DAEKSILHHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILETKDRFTVVQGYAGVG
KTTQFRAVMSAVNLLPESERPRVVGLGPTHRAVGEMRSAGVEAQTLASFLHDTQLQQRSG
ETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQT
RSAADVAIMKEIVRQTPELRDAVYSLINRDVNKALSGLENVKPVQVPRLKGAWAPENSVT
EFSRLQERELAKAAQEAEKKGEAFPDVPVTLYEAIVRDYTGRTPEAREQTLIVTHLNEDR
RVLNSMIQDALAKPGEQQVTVPVLTTANIRDGELRRLSTWEAHPGALALVDNVYHRIAGI
SKEDGLITLEDKAGNTRLISPREAAAEGVTLYNPETIRVGAGDRMRFTKSDRERGYVANS
VWTVTAVSGDSVTLSDGKQTRVVRPGQDRAEQHIDLAYAITAHSAQGASETFAIALEGTE
GGRKQMAGFESAYVALSRMKQQSEREMMNAERLFSTARELRDVAAGRAVLRNAGLAQGDS
RARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGAGLRGFTGEGRVKGSEEAQF
VALQGSRNGESLLAGSMQDGVRIARENPDSGVVVRIVGDGRPWNPVAITGGRVWGDIPDS
NVQPGAGNGEPVTAEILAQRQAEEAVRRETERRADEIVRKMAEDKSDLPEEKTAQAVREI
AGQEQDRMTPPEREPPLPESVLREPQRERETIREVARENRGRERLQQMEQEMVRDLQKEK
TPGGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1314
Plasmid name p22495-1
GenBank accession number NZ_CP017618.1
Incompatibility group IncFIB(S)
Genome size 93055 bp
Coordinate of oriT  [Strand] 59333..59591 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico Salmonella plasmid virulence
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica 22495 [90371]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU