oriTDB
The information of the oriT region
oriTDB accession number 100797
Name oriT_pEC732_IMP14  insolico
Sequence Completeness intact
oriT length 551 nt
oriT sequence GAGCAGAGCTATGTGTGACAAGAAGTATAGAAATTACGAGGTAGCCATCATGGTCGATGT GAACCCTTTCGACAGGGTTATGAATGAATTGAAAAGTCGTGGCCGCAAGAACGCTCACAT CCTGAGCATCCTCCAATTCGACTGGCCTGCATCGGAGGCCATCATCGAGAAGCTGAGCTG CTACATCACAGACGGGATTAAGGCTAATCAGGAGCCTGTGATTTACCCGATCATTGAAGA AGCTCTGCATCGCTACAGCCAGCTCGTGTTTCATGAGCAGAGAGAGAAATATGAAGACCC GGCCAGAATTGGGGCATTTCTGGAAACCCTGATCACCGAAACCTGCCGGGCGTTGGAAGT GCAAATTGTCGATAGTGGCGGTGATTCATGGTCTGTCGATTCAGGAGAGTCGTTCTCACT GTGGCTTTCTTCCCATCCAGGAGAACTATCCATTAACCCGCAGCCCCATGAGGATGAGAC CTCTTTGCGTGGCTTGCTGTATGAGCTCATCACCTGTGAGAGCGTGAAAACTGTTTTAAG GAGAACCGACT
IR (inverted repeat)IR1: [62-70] [71-79] nt  (AACCCTTTC..GACAGGGTT)
IR2: [143-150] [154-161] nt  (TGGCCTGC..GGAGGCCA)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L: 62-70;R:71-79;L:143-150;R:154-161
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 869
Name Relaxase_pEC732_IMP14 insolico
GenBank accession number WP_000130000
Family MOBC
Length 101 aa
UniProt ID _
PDB ID _
Pfam PadR [PF03551.13], Evalue: 4.70E-21, Aligned region: 15..85
HTH_34 [PF13601.5], Evalue: 2.60E-08, Aligned region: 27..94
Note putative relaxase
Protein sequence [Download] MTDKDLYGGLIRLHILHHAAEEPVFGLGIIEELRRHGYEMSAGTVYPMLHGLEKKGYLTS
RHERTGRRERRVYDITEQGRTALADAKTKVKELFGELVEGG
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1257
Plasmid name pEC732_IMP14
GenBank accession number NZ_CP015139.1
Incompatibility group IncA/C2
Genome size 186826 bp
Coordinate of oriT  [Strand] 88649..89199 [-]
Drug resistance _
Heavy-metal resistance insolico mercury resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli Ecol_732 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU