oriTDB
The information of the oriT region
oriTDB accession number 100753
Name oriT_pCCGM7-B  insolico
Sequence Completeness core
oriT length 34 nt
oriT sequence CCAAGGGCGCAATTATACGTCGCTGGCGCGACGT
IR (inverted repeat)[17-23] [28-34] nt  (ACGTCGC..GCGACGT)
Location of nic site [7-8] nt
Conserved sequence flanking the
  nic site 		AGGG|CGCA
Note predicted by the oriTfinder
L:17-23;R:28-34;D:7-8
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 825
Name TraA_pCCGM7-B insolico
GenBank accession number WP_037390291
Family MOBQ
Length 1103 aa
UniProt ID A0A1L3L9H9
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 4.90E-74, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.40E-56, Aligned region: 381..569
AAA_19 [PF13245.5], Evalue: 3.20E-09, Aligned region: 386..513
Note putative relaxase
Protein sequence [Download] MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMGFEREARTIDYTRKQGLLHEEFVVPADAP
EWLRAMIADHSVSGASEAFWNKVEGFEKRADAQLAKDITIALPIELSTEQNIVLIRDFID
RHVTSKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAKKIAVLGPDGTPIRNNSGKIL
YELWAGSAADFNAFRDGWFACQNKHLSLAGLDIRIDGRSFEKQGIELTPTIHLGVGAKAI
ERKPAEAGRDISLERLELQEERRGENARRIQRRPEIVLDLITREKSVFDERDVAKILHRY
FDDAGRFHSLMARILQSPETLRLERERIDFASGLRAPAKYTTRELIRLEAEMADRANWLS
LQSSHGIRDAVLEATFARHTRLSEEQKAAIAHVVAGERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGGALAGKAAEGLEKEAGILSRTLSSWELRWSEGRDLIHDRTVFVLDEAGMV
SSRQMALFVETATKAGAKLVLIGDPQQLQPIEAGAAFRAIADRIGYAELGTIYRQREQWM
RDASLDLARGNVGKAVEAYRAHGHVTGSALKTEAMQALITDWNRDYDPTRTSLILAHLRR
DVRMLNEMARAKLVERGIVDEGFAFRTEDGSRKFATGDQIVFLKNEGALGVKNGMLAKVV
DAAPGRIVAEVGEAEHRRRVTVESRFYNNVDLGYATTIHKSQGVTVDRVKVLASLSLDRH
LAYVAMTRHREDLAIYYGRRSFAKAGGLIPILSRKNAKETTLDYANGRLYRQALRFARAR
GFHLVSVARTLVRDRLEWTVRQKSRFAELGARLSAIAGKLGLSAAAAGTSQPRTVKELKP
MVSGITTFAKSLEQAVEDRLAADPGLMKQWQEVSARFHLVYAQPEAAFKAADVDAMLKDG
AAAKTTISRIGSEPKAFGPLKGKTGMLVSRAEKQTRETAIANAPALARNLERYLRQRTVA
ARKYVIEERAMRLKVAFHIPALSPAAKQTLERVRDAIDRNDLPAGLEYAVADKMVKAELE
GFSRAVSERFGERTFLPLAAKDTGGQAFQSVSDGMSEAQKAELQSAWNSMRTVQQLAAHE
RTAEALKQAETMRQTKSQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1213
Plasmid name pCCGM7-B
GenBank accession number NZ_CP013053.1
Genome size 547106 bp
Coordinate of oriT  [Strand] 40338..40371 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Sinorhizobium americanum CCGM7 [1408224]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU