 oriTDB accession number | 100733 |
| Name | oriT_pCFSAN000679_01  |
Sequence Completeness  | intact |
| oriT length | 259 nt |
| oriT sequence | GCAGCGCCCCCAGGGGTGTTACTTAAAAACAGGCACAGCGACGCTAGCAGCGCCCCTGAT ATAATGCAATGTTTTTTATAAAAATAGTCAGTACTACCCCTGTATAGCGTCGTCATAGCG GTGCCGGCGACGTGCCTGCACCGCTATTTAATACTTTAAGATAAATTAAATTACATTATT ATGAACATAACTCACTGTTACTAAAAACAAATCAGCAAAATTTTAATTTTGCGTGGGGTG TGGTGCTTTTGGTGGTGAG |
| IR (inverted repeat) | [115-128] [134-147] nt (ATAGCGGTGCCGGC..GCCTGCACCGCTAT) |
| Location of nic site | [241-242] nt |
| Conserved sequence flanking the nic site | GTGGGGTGT|GG |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 805 |
| Name | TraI_pCFSAN000679_01 |
| GenBank accession number | WP_053253528 |
| Family | MOBF |
| Length | 1747 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | TrwC [PF08751.10], Evalue: 8.90E-76, Aligned region: 10..284 TraI [PF07057.10], Evalue: 5.70E-58, Aligned region: 1430..1552 AAA_30 [PF13604.5], Evalue: 1.40E-34, Aligned region: 967..1163 AAA_19 [PF13245.5], Evalue: 7.70E-09, Aligned region: 972..1107 |
| Note | putative relaxase |
| Protein sequence [Download] | MMSIAQVRSAGSAAGYYSDRDNYYVLGSLEERWAGKGAEQLGLQGAVDKEVFTRVLEGRL PDGADLSRQQDGSNKHRPGYDLTFSAPKSVSLMAMLAGDKRLTEAHNQAVDIAVRQVEAL ASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTLHDGEWKTLSSDKV GKTGFIENVYANQIAFGKIYRAVLKEKVEALGYETEVVGKHGMWEMPGVPVEAFSSRSQV IREAVGEDASLKSRDVAALDTRKSKQHVDPEVKMAEWMQTLKDTGFDISAYREAADRRAE IQVAQPAPSQEQPDIQQAVTQAIAGLSDRKVQFTYTDVLARTVGMLSPEAGVIEKARAGI DEAISREQLIPLDREKGLFTSGIHVLDELSVRALSSDIMKQNRVTIHPEKSVPRTGSYSD AVSVLAQDRPSLAIISGQGGAAGQRERVAELTMMAREQGREVQIIAADRRSQTNLKQDER LSGELITGRRQLQEGMSFSPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRT GTGSALMAMKEAGVNSYRWQGGQQTPATVISEPDRNVRYARLAGDFVAAVKAGEESVAQV SGVREQAILAGMIRSELKTQGILGQQDTMMTALSPVWLDSRNRYLRDMYREGMVMEQWNP EKRSHDRYVIDRVTAQSHSLTLRDAQGETQMVRISALDSSWSLFRPEKIPVADGERLMVT GKIPGLRVSGGDRLQISAVNDGMMTVIVPGRAEPASLPVGDSPFTALKLENGWVETPGHS VSDSAKVFASVTQMAMNNATLNGLARSGRDVRLYSSLDETRTAEKLSRHPSFTVVSEQIK ARAGEVSLETAISRQKAGLHTPAQQAIHLALPVVESKNLAFSQVELLTEAKSFAAVGTGF ADLGREIDAQIKRGDLLHVDVAKGYGTDLLISRASYDAEKSILHHVLEGKEAVTPLMERV SGELMETLTSGQRAATRMILETKDRFTVVQGYAGVGKTTQFRAVMSAVNLLPEDERPRVV GLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMA RAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELRDAVY SLINRDVNKALSGLENVKPIQVPRLKGAWVPENSVTEFSRLQERELVKAAQEAEKKGEAF PDVPVTLYEAIVRDYTGRTPDAREQTLIVTHLNEDRRVLNSMTQDALAKPGEQQVTVPVL TTANIRDGGLRRLSTWENHQGALALVDKVYHRIAGISKEDGLITLQDADGNTRLISPREA PAEGITLYNPETIRVGAGDRMRFTKSDRERGYVANSVWTVTAVSGDGVTLSDGKQTRVVR PGQDRAEQHIDLAYAITAHGAQGASETFAIALEGTEGGRKQMAGFESAYVALSRMKQHVQ VYTDDRQGWVKAINSAEQKGSAHDVLEPKSEREMMNAERLFSTARELRDVAAGRAVLRNA GLAQGDSRARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGAGLRGFSGEGRVK GSEEAQFVALQGSRNGESLLADNMQEGVRIARDNSDSGVVVRIAGDGRPWNPGAITGGRV WGDIPDSSVQPGAGNGEPVTAEILAQRQAEEAVRRADEIVRKMAEDKSDLPEEKTAQAVR EIAGQEQDRTLLPERKPPLPESVLREPVRERETILEVARESRVQERLQQMEQEMVRDLQK ERTPGGD |
Reference| ID | 1193 |
| Plasmid name | pCFSAN000679_01 |
| GenBank accession number | NZ_CP012345.1 |
| Incompatibility group | IncFIB(S) |
| Genome size | 119113 bp |
| Coordinate of oriT [Strand] | 102856..103114 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 [938142] |
Reference| [1] Yao K et al (2016) Complete Genome and Methylome Sequences of Two Salmonella enterica spp. Genome Announc. 4(1). [PMID:26798102] |