oriTDB
The information of the oriT region
oriTDB accession number 100664
Name oriT_pKLDS1.8701  insolico
Sequence Completeness intact
oriT length 463 nt
oriT sequence TTAGTGGATGAACAAATAAAATACGAGAGATTTTTTGTTCATTCATCCATGGTTTTAGAA AAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTCTTCTTTTTGTATGACA AAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGGAGGTGGCGTTTGCGTAAA GCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGC AACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATCTAT GGCTTTATATGGTCTATTTTGTTATAATAATTGTAACCGAATAGGGCGCAATGATTATTA CAAAATCAATGACAAAGGGCGATTGAGGAATGAGCGCTGGGGCATTTTATCTTTGAGGAG GCTATTTATGGACCAGAAAGAAGTATCACAAAATCAAACAAAG
IR (inverted repeat)IR1: [138-147] [152-161] nt  (CCCATTTTAT..ATAAAATGGG)
IR2: [207-219] [223-235] nt  (AAAAGGGGAAAGT..ACTTCCCCCTTTT)
IR3: [242-255] [268-281] nt  (ACATTGTAATACAA..TTGTATTACAATGT)
Location of nic site [290-291] nt
Conserved sequence flanking the
  nic site 		CTTG|CA
Note predicted by the oriTfinder
L:138-147;R:152-161;L:207-219;R:223-235;L:242-255;R:268-281;D:290-291
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 736
Name Relaxase_pKLDS1.8701 insolico
GenBank accession number WP_052541636
Family MOBP
Length 410 aa
UniProt ID A0A0D5ML92
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.50E-73, Aligned region: 9..280
Note putative relaxase
Protein sequence [Download] MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGI
DPFIAKEQFDVVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLY
PNHQSAVYTHLDGKNHVLHNHIIVNKVNLDTGKKLREQKGESVQRAREMNDRLASRENWH
ILEPPKERQTETEKELIAKNEYSYMDDLRERINKSLQYVSVSSYKTFKECLSDNGVILSE
RGKTFSYAFLDANNKQRRARETRLGSDFGRETILHELENRARQNEFRAVEQREPPITPLE
RDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQFAGRLPELTQRVARKLKQTK
EKILDDFERRFSKDMKNYEQEQQKILEKQANRDVQSEKKPTKDHDRGMSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1124
Plasmid name pKLDS1.8701
GenBank accession number NZ_CP009908.1
Genome size 10600 bp
Coordinate of oriT  [Strand] 7173..7635 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Lactobacillus helveticus KLDS1.8701 [1587]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU