oriTDB
The information of the oriT region
oriTDB accession number 100620
Name oriT_pUMAF0158  insolico
Sequence Completeness intact
oriT length 146 nt
oriT sequence CGAATTCGTTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGT AGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTG TTGTTGTCGTTGTTGGTTGTCGTCAT
IR (inverted repeat)IR1: [38-43] [52-57] nt  (AAAAAG..CTTTTT)
IR2: [72-83] [87-98] nt  (GTGCCAAAGGGG..CCCCTTTGAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:38-43;R:52-57;L:72-83;R:87-98
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 692
Name Relaxase_pUMAF0158 insolico
GenBank accession number WP_080376851
Family MOBP
Length 1247 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 5.00E-07, Aligned region: 10..266
Note putative relaxase
Protein sequence [Download] MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSVTRAIYESIPDHGQDRYL
TFTLSFKEDTVSPELLKAVTTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVID
RKPHIHIIIPRINLLSGNEANPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDA
ASVLSRYKGDDFYGKNRQFKQQLVEQVIERGVTSRADFYALVAEHGETRIRNEGKDNEYI
SVKLPGDAKGTNLKDTIFQDDFIVRRELRKPPLEASVIQERLLAWPQRAREIKYVNKATP
KFRKQYSQASPEERVRLLAERETNFYRAHGDDYESVHTWQRQRDNQRSPAETTGRRTAAP
ADGLQDLSVSDVADHRQAGPTRSRDGALLLPSDAHVHVGQSQPGGDSGLRSSVPGGGGGG
RRVGSTAERGRGGSQPAAVSQETKGTATPAGATGRRRAGAGKPRNTRVRAGRLVPPYAQN
PHRVATIADIEERGRRLFDPLKRPSDNALVFYRSSSHPQVADQLPQATAATTTSVQSTAG
RRPRTSGKPRPPRQWRPGSVVPPYAKNPHRVATVADIEQRARMLFDPLKRPADKALVFKR
ASIKALTLNKHASTVAAYFTRQAQHNQIAPAHRWAIRRIDQQYFALRRAVFSDQRLTRQD
KAQLVSVLTFERLKAREQFHKSQPNIEVNLMGSAAIRNLLDDEKEDPGFSISGARGPGRE
GVRDQVKRIMDRFAKQVDPAAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKTLFVDT
GTTISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKA
MNQSLADRRAELDIERGGQSIGPATDLPRHVDDATRDVRDQADRLDVTVPIEALYGQGKT
ADQVSQALAAQLDTVPESERIAFVETVAITLAIPERGEPKGDQAFAQWQAQRAQPAADSA
ATATAETQTRVPTPSGAAPEPLIPEAAKPALANDPALQSPSELVRLEAQWRRDFPMSEAD
VRASDTVMGLRGEDHAVWIIATNDKTPEAAAMLTAYMENDSYREAFKASIVAAYKQVENS
PKLVDDLDHLTAMAAQIVNEVEDRLYPAPQASSESTNKIIEGTLIEHGEAPYQHNDDNQM
SYFVTLKPEGSKPRTVWGVGLAEAMSEADLKQGDQVRLQDLGTQPVVVQVIEEDGTVTDK
TVNRREWSAQPVAPEREVAETTPKGQAAAAGTPELSSPDEDDGMSVD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1080
Plasmid name pUMAF0158
GenBank accession number NZ_CP005971.1
Genome size 63004 bp
Coordinate of oriT  [Strand] 20885..21030 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pseudomonas syringae UMAF0158 [1332075]
Reference
[1] Martínez-García PM et al (2015) Bioinformatics Analysis of the Complete Genome Sequence of the Mango Tree Pathogen Pseudomonas syringae pv syringae UMAF0158 Reveals Traits Relevant to Virulence and Epiphytic Lifestyle. PLoS One. 10(8):e0136101. [PMID:26313942]

Microbial Bioinformatics Group in MML, SJTU