 oriTDB accession number | 100578 |
| Name | oriT_pESBL-315  |
Sequence Completeness  | intact |
| oriT length | 110 nt |
| oriT sequence | TCACTTCAGGCTCCTTACGGGGTGTCGGGGCGAAGCCCTGACCAGATGGCAATTGTAATA GCGTCGCGTGTGACGGTATTACAATTGCACATCCTGTCCCGTTTTTCAGG |
| IR (inverted repeat) | IR1: [24-31] [35-42] nt (GTCGGGGC..GCCCTGAC) IR2: [49-65] [72-88] nt (GCAATTGTAATAGCGTC..GACGGTATTACAATTGC) |
| Location of nic site | [96-97] nt |
| Conserved sequence flanking the nic site | CATCCTG|T |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 650 |
| Name | NikB_pESBL-315 |
| GenBank accession number | YP_009061728 |
| Family | MOBP |
| Length | 623 aa |
| UniProt ID | A0A075URU2 |
| PDB ID | _ |
| Pfam | |
| Note | putative relaxase |
| Protein sequence [Download] | MDGKFLVMDGWDRNREGVQLDSFGPSWCAEKLMKKMGDYTPVPKDIFSQVEAPGRYNPDF IAADVRPEKIAETESLQQYACRHLGERLPEMAREGRLENCQAIHRTLAEAGLWMRVQHGH LVICDGYDHNQTPVRADSVWSLLTLDNVNQLDGGWQPVPTDIFRQVTPTERFRGRRMESC PATDKEWHRMRTGTGPQGAIKRELFSDKESLWGYSISHCSPQIEEMITQGEFTWQRCHEL FAQQGLMLQKQHHGLVVVDAFNHEQTPVKASSIHPDLTLGRAEPQAGPFVSAPADLFDRV QPESRYNPELAVSDRYGVSSKRDPMLRRQRREARAEARADLRARYLAWREQWRKPDLRYG ERCREIHQACRLRKSHIRAQYDDPALRKLHYHIAEVQRMQALIRLKEDIRDERQKLIADG KWYPPSYRQWVEIQAAQGDRAAVSQLRGWDYRDRRKDRSRTTTTDRCVVLCEPGGTPVYG NTGDLEARLQKNGSVRFRDRRTGEFVCTDYGDRVVFRNHHDRNALADKLDLIAPVLFGRD PRMGFEPEGNDKQFNQVFAEMVAWHNVTGRTGHEDYRITRPDVDHHREGSERYYRDYIAA NSNDDASLPPPEQDKRWEPPSPG |
Reference| ID | 1038 |
| Plasmid name | pESBL-315 |
| GenBank accession number | NC_024980.1 |
| Incompatibility group | IncI1 |
| Genome size | 93037 bp |
| Coordinate of oriT [Strand] | 45045..45154 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Escherichia coli ESBL-315 [562] |
Reference| [1] Brouwer MS et al (2014) Complete Genome Sequences of IncI1 Plasmids Carrying Extended-Spectrum β-Lactamase Genes. Genome Announc. 2(4). [PMID:25169863] |