oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100550
Name	oriT_pJJ1886_3
Sequence Completeness	intact
oriT length	84 nt
oriT sequence	GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTT AACCATTCGGCATCAGTGCGGATT
IR (inverted repeat)	[4-13] [17-26] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[57-58] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:4-13;R:17-26;D:57-58

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	622
Name	MobC_pJJ1886_3
GenBank accession number	WP_000955999
Family	Other
Length	107 aa
UniProt ID	_
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note	putative relaxase
Protein sequence [Download]	MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1010
Plasmid name	pJJ1886_3
GenBank accession number	NC_022662.1
Incompatibility group	ColRNAI
Genome size	5631 bp
Coordinate of oriT [Strand]	5253..5336 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli JJ1886 [1355100]

Reference

[1] Andersen PS et al (2013) Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131. Genome Announc. 1(6). [PMID:24309736]