oriTDB
The information of the oriT region
oriTDB accession number 100531
Name oriT_pDB2011  insolico
Sequence Completeness core
oriT length 39 nt
oriT sequence CTTTACGAATGTAAAGTATAGTGTGTTATACTTTACATG
IR (inverted repeat)[1-6] [11-16] nt  (CTTTAC..GTAAAG)
Location of nic site [25-26] nt
Conserved sequence flanking the
  nic site 		GTG|TTA
Note predicted by the oriTfinder
L:1-6;R:11-16;D:25-26
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 602
Name Mob_pDB2011 insolico
GenBank accession number YP_008119849
Family MOBV
Length 408 aa
UniProt ID R9SAC3
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 5.80E-71, Aligned region: 1..193
Note putative relaxase
Protein sequence [Download] MSMIAARMQKLKAGNLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENF
INENKSTTRAVRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRY
ATVHLDESTPHMHMGIVPFDKDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIARGQKG
SERKNLTVPEFKKLKEEELEIKKELQIKKDELIAYTKENQIDKKLDITPIKEMEDIEIET
DEKTLFGKNKTEIVRQWTGNIILSENDYLKLNKEIKKGKKTEGRLAAILETDVYQENKEL
KNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKSQIGDLKEEIKLIYQSTKRFLKDR
ISDFKAFKEVFKELADNISNISREKGLDSSFKKEFDRENKKKQTRGIR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 992
Plasmid name pDB2011
GenBank accession number NC_021513.1
Genome size 7641 bp
Coordinate of oriT  [Strand] 7563..7601 [+]
Drug resistance insolico spectinomycin resistanc; trimethoprim resistance; resistance to macrolides
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Listeria innocua TTS-2011 [1642]
Reference
[1] Bertsch D et al (2013) pDB2011, a 76 kb multidrug resistance plasmid from Listeria innocua replicating in Gram-positive and Gram-negative hosts. Plasmid. 70(2):284-7. [PMID:23774482]

Microbial Bioinformatics Group in MML, SJTU