oriTDB
The information of the oriT region
oriTDB accession number 100527
Name oriT_pSA8589  insolico
Sequence Completeness core
oriT length 41 nt
oriT sequence CACTTTATGAATATAAAGTATAGTGTGTTATACTTTACATG
IR (inverted repeat)[2-8] [13-19] nt  (ACTTTAT..ATAAAGT)
Location of nic site [27-28] nt
Conserved sequence flanking the
  nic site 		GTG|TTA
Note predicted by the oriTfinder
L:2-8;R:13-19;D:27-28
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 598
Name Mob_pSA8589 insolico
GenBank accession number YP_007988854
Family MOBV
Length 408 aa
UniProt ID R4NGV8
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 2.30E-71, Aligned region: 1..193
Note putative relaxase
Protein sequence [Download] MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENF
INENKSTTRAVRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRY
ATVHLDESTPHMHMGIVPFDKDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIARGQKG
SERKNLTVPEFKKLKEEELEIKKELQIKKDELIAYTKENQIDKKLDITPIKEMEDIEIET
DEKTLFGKNKTEIVRQWTGNIILSENDYLKLNKEIKKGKKTEGRLAAILETDVYQENKEL
KNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKSQIGDLKEEIKLIYQSTKRFLKDR
ISDFKAFKEVFKELADNISNISREKGLDSSFKKEFDRENKKKQTRGIR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 988
Plasmid name pSA8589
GenBank accession number NC_021230.1
Genome size 6962 bp
Coordinate of oriT  [Strand] 3535..3575 [+]
Drug resistance insolico gene responsible for resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins and streptogramin A
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus aureus 1 [1280]
Reference
[1] Mendes RE et al (2013) Dissemination of a pSCFS3-like cfr-carrying plasmid in Staphylococcus aureus and Staphylococcus epidermidis clinical isolates recovered from hospitals in Ohio. Antimicrob Agents Chemother. 57(7):2923-8. [PMID:23571552]

Microbial Bioinformatics Group in MML, SJTU