oriTDB
The information of the oriT region
oriTDB accession number 100514
Name oriT_pXF-RIV5  insolico
Sequence Completeness intact
oriT length 103 nt
oriT sequence AGCCTCGCAGAGCAGGATTCCCGTTGAGTACCGAAGGTGCGAATAAGGGAAAGTGAAGAA GGAACACCGGATTTCCGGTGGGCCTACTTCACATATCCTGCCC
IR (inverted repeat)[53-70] [75-92] nt  (GTGAAGAAGGAACACCGG..CCGGTGGGCCTACTTCAC)
Location of nic site [100-101] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:53-70;R:75-92;D:100-101
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 585
Name TraI_pXF-RIV5 insolico
GenBank accession number YP_007354920
Family MOBP
Length 830 aa
UniProt ID L7SYI0
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.60E-53, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIAKHVPMRVVKKSDFRELVKYLSNQQGKQERVGCVTVTNCFQNNVLDAALEVQATQALN
TRSEADKTYHLLISFREGENPAPEILEVIESRVCAALGYADYQRVSVVHHDTDNLHIHVA
INKIHPKSYTIHTPYNDYKTLGEICKKLEREYGLEADNHTVRKTVGENRADDMERNAGVE
SLLGWIKRECTDQIKQVQSWSELHAVMQRNGLEIRERGNGLVITNGVGRSVKASSVARDF
SKAKLEARFGAFESFVKQAPSVSSVHARRIQAPLVEKVGRRPPPRSKGRTPSLSSVGVLH
VNSGIRYEQRPIYVKQASTAELYAMYKLEQQDLGAVRNVAIARARTKRDRKIEATKRLGR
IKRAAIKLMRGPGVNKKLLYALARKPLKEGVEKANTDYLKARDAAYATYHRRVWADWLQV
QATQGNAEALAALRAREMRQWWSCNIFGGLQARRTGPVPGLKSDNITKAGTIIYRVGSTA
IRDDGDLLNVSHGAGDYGVEAALRMAMYRYGERITVKGSDEFKKRVVQIAAAARLNISFD
DEVLDKRRKQLVSDAAVIVKLTDAMLSDKTAQFTQAQASRVGAFQEDALSEYDAAISRSI
NLANQEQINEQQRTRAKHYFVQRWSDRGGPNSRRDGHATRIRSGGGGSGKHGASGATVIS
SAGGFNKPNVGGIGAKPPPASTHRLRNLHQLGVVQFSRGSEVLLPRHVSDCVGEQQTERN
HRVRRDVHTAGITSSELMAVDKYIAERELKRVREFDIMKNRRYNEDDAGMVKFAGLRQVD
GKSLVLLKRNDEVIVLAIDVATARRMKRFSLGDEVLLTKKGTLKTKGRNR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 975
Plasmid name pXF-RIV5
GenBank accession number NC_020121.1
Genome size 38297 bp
Coordinate of oriT  [Strand] 26824..26926 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Xylella fastidiosa subsp. multiplex Riv5 [644357]
Reference
[1] Rogers EE et al (2012) A conjugative 38 kB plasmid is present in multiple subspecies of Xylella fastidiosa. PLoS One. 7(12):e52131. [PMID:23251694]

Microbial Bioinformatics Group in MML, SJTU