oriTDB

The information of the oriT region

oriTDB accession number	100476
Name	oriT_pSD5.6
Sequence Completeness	intact
oriT length	83 nt
oriT sequence	GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA CTTATTCGGCATCAGGGCGCATT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	547
Name	MbeA_pSD5.6
GenBank accession number	YP_006957910
Family	MOB_P
Length	517 aa
UniProt ID	K4JYQ1
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 4.70E-19, Aligned region: 41..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRL QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDA LYHVGEIKGRQDVIQALTEAGIEVVRVTRSSISIADPNGGRNIRLKGAFYEQSFTDGRGV REKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRRYSPVHSLDREIAGKTPGRGE RGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRNQEAGRDIAET EREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQREL EIREERLIQEREHVLSLERERQPEIQERTLDGPSLGW

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	937
Plasmid name	pSD5.6
GenBank accession number	NC_019136.1
Incompatibility group	ColRNAI
Genome size	5687 bp
Coordinate of oriT [Strand]	3621..3703 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica serovar Derby [28144]

Reference

[1] Bleicher A et al (2013) The plasmidome of a Salmonella enterica serovar Derby isolated from pork meat. Plasmid. 69(3):202-10. [PMID:23333216]