oriTDB
The information of the oriT region
oriTDB accession number 100399
Name oriT_pSFxv_4  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACCATGCGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 470
Name Putative relaxase of pSFxv_4 insolico
GenBank accession number WP_025715427
Family MOBP
Length 521 aa
UniProt ID A0A1W2MWW5
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 9.50E-21, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAESITRWIDA
LYHVGEIKGRQDVIQALTEAGLEVVRVTRSSISIADPNGGKNIRLKGAFYEQSFTDGRGV
REKAERESRIYRENAERRVQEARRICKQGCDIKRDENQRRYSPVHSFDRGITEKTSGRGE
RGDDAAQEGRVKAGREYGHDVTGDGHFPVYREWRDALVSWRDDTGEPGRNQEAERESGEA
EREDMGRALSRGEQRTFSGVARGDESRNELDDGKRETECRKAGTGVTEHDGAGKPFAERI
RAAATGLYAAAERMGERLRGIAENVFAYATGQRDAERAGHAVESAGAALERADRTLEPVI
QRELEIREERLIQEREHALFLERERQPEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 860
Plasmid name pSFxv_4
GenBank accession number NC_017321.1
Genome size 4042 bp
Coordinate of oriT  [Strand] 208..290 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Shigella flexneri 2002017 [591020]
Reference
[1] Ye C et al (2010) Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri. J Clin Microbiol. 48(2):419-26. [PMID:19955273]

Microbial Bioinformatics Group in MML, SJTU