oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100373
Name	oriT_p157F-NC2
Sequence Completeness	core
oriT length	32 nt
oriT sequence	ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)	[1-8] [12-19] nt (ATGCAACC..GGTTGCAT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	TAAGTGCG\|CCCT
Note	predicted by the oriTfinder
	L:1-8;R:12-19;D:28-29

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	444
Name	MobA_p157F-NC2
GenBank accession number	WP_013582285
Family	MOB_Q
Length	566 aa
UniProt ID	E8MXD7
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 2.60E-64, Aligned region: 17..254
Note	putative relaxase
Protein sequence [Download]	MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAS AEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA TYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK TDKRGRRQWKRMSVSLNPLDRKAKLKALRESWAKTCNARLDETARIDHRSLEDQGSDLEP TIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTELGRIFDRLGELFAAKIRQLR QRQARPEPAREPNWRYFEGDARRQLEADRADHTAAIRGKLMGAKADVRNREEWWRSHGTE EFEAAKQIIDVARAASRGARDANVFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPSD WDQANRFRMRTTKAIHDHDMQPRTGLVDELERQLEQAERAEGEKPSPEQVKALALRMAEQ RERAAEDPTQDMNRPEPSGDEPLDLSEPEDLGESGPFEERSAPRTKADLLREIRQRADRR TGQQEAEQRQIDPWQAQPPQRRGHGR

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	834
Plasmid name	p157F-NC2
GenBank accession number	NC_015066.1
Genome size	3624 bp
Coordinate of oriT [Strand]	3418..3449 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Bifidobacterium longum subsp. infantis 157F [565040]

Reference

[1] Fukuda S et al (2011) Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature. 469(7331):543-7. [PMID:21270894]