oriTDB
The information of the oriT region
oriTDB accession number 100357
Name oriT_pSN11/00Kan  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTATGTGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 428
Name MobA_pSN11/00Kan insolico
GenBank accession number YP_003543173
Family MOBP
Length 529 aa
UniProt ID D5I152
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.10E-19, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEIRELIDATPFSKKYTSGVLSF
AEKELPPGERERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRL
QPYYDRADRPRINAWQTLVNHHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA
LYRAGAIKTRQDVTEALTAAGFEVVRTTRSSISIADPEGGRNLRLKGALYEQSFTNGNGL
REETERASRFYREHAEQRVQEARRVCRQGTELKQAENQRRYQRTYNIRETATGYAEHHRE
HAAQHHRGRTVPAAEKPALAGDQRAGTVSGADRAQRHGRHFPGVLGADSVAGKQDCEKYL
DHQRAGKHAGETRGKNLGGDVRQWREREISGAAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRRIAEDARGYATEQRDTERACRELESAGAAIS
RTSRPLESVIYHEQQIRDEQERQAQELARRWHEEQEPEARIWRGPSMGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 818
Plasmid name pSN11/00Kan
GenBank accession number NC_014003.1
Incompatibility group ColRNAI
Genome size 5698 bp
Coordinate of oriT  [Strand] 990..1072 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Newport SN11/00 [108619]
Reference
[1] Chen CY et al (2010) Characterization of small ColE1-like plasmids conferring kanamycin resistance in Salmonella enterica subsp enterica serovars Typhimurium and Newport. Plasmid. 63(3):150-4. [PMID:20100512]

Microbial Bioinformatics Group in MML, SJTU