oriTDB
The information of the oriT region
oriTDB accession number 100350
Name oriT_SAP108B  insolico
Sequence Completeness intact
oriT length 238 nt
oriT sequence AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATT ATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA CCACTTAACGACTTGATGAATCTTACTTTATCATATAAAGTAAGATGTAAGAAAGGCGTT ATCTTTCGAAGAAAGCGTGGTGGGATGTATGAGCGAACAAAATACATTTGTGGCTAGC
IR (inverted repeat)IR1: [52-59] [61-68] nt  (TTGGGGAT..ATCCCCAA)
IR2: [94-98] [104-108] nt  (TGGCT..AGCCA)
Location of nic site [115-116] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:52-59;R:61-68;L:94-98;R:104-108;D:115-116
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 421
Name Rlx_SAP108B insolico
GenBank accession number YP_006939270
Family MOBP
Length 335 aa
UniProt ID D2JCJ6
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.80E-80, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKISATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ
SFKPDEVTSEQCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNN
KQALRNVRDFNDEVCRSHSLSVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI
DQSQATNMDEFQMHLKQHGVEIERVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE
RQIQRQQQERESDTDFQPKRPTSNRDESTERDTGVTQSDWDKFAQDTNELERRRQAAESA
RLADEKARRDREERERAKQASRRIINNDRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 811
Plasmid name SAP108B
GenBank accession number NC_013390.1
Genome size 6206 bp
Coordinate of oriT  [Strand] 1956..2193 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus epidermidis SK85 [1282]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU