oriTDB
The information of the oriT region
oriTDB accession number 100349
Name oriT_SAP018B  insolico
Sequence Completeness intact
oriT length 239 nt
oriT sequence AGTGGCTAGCATTTTGCCACTCATTTTTTGCTTTAGCAAAAACATAAGGGGCTTGGGGAT TATCCCCAACAAGCCGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAA ACCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAAT ATCTTTCGTAGAAAGCGTGGTGGGATTTGATGAGCGAACAAAACCATTTTGTGGCTAGC
IR (inverted repeat)IR1: [53-60] [62-69] nt  (TTGGGGAT..ATCCCCAA)
IR2: [95-99] [105-109] nt  (TGGCT..AGCCA)
Location of nic site [116-117] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:53-60;R:62-69;L:95-99;R:105-109;D:116-117
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 420
Name Rlx_SAP018B insolico
GenBank accession number YP_006939231
Family MOBP
Length 335 aa
UniProt ID D2J6Q7
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.20E-79, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKVTRELYGKTGGNEGHVIIQ
SFKPGEVTPEQCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNN
KQALRDLRDFNDDVCREHSLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI
DQSKATNMDEFKDHLSQYGIEIARVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE
RQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDWDKFAQDTNELERRRQAAESA
RLADEKARRDREERERAKQASRTIIDNDRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 810
Plasmid name SAP018B
GenBank accession number NC_013388.1
Genome size 8226 bp
Coordinate of oriT  [Strand] 7429..7667 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus sp. CDC25 [678600]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU