oriTDB
The information of the oriT region
oriTDB accession number 100257
Name oriT_pMG1  insolico
Sequence Completeness core
oriT length 32 nt
oriT sequence ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)[1-8] [12-19] nt  (ATGCAACC..GGTTGCAT)
Location of nic site [28-29] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:1-8;R:12-19;D:28-29
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 328
Name Mob_pMG1 insolico
GenBank accession number YP_232882
Family MOBQ
Length 646 aa
UniProt ID Q53EJ2
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 6.50E-62, Aligned region: 17..254
Note putative relaxase
Protein sequence [Download] MAIYHLSVSNVSRASGSKATATLSYISGRRVHDERRGAYDYGRKERDVLRVGTLLPEGAP
AEYADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA
TYAIHDDGRGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK
TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWANTCNARLDETARIDHRSLEDQGSDLEP
TIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAELGRIFDRLGELFAAKIGRLR
RRQARPEPAEPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNREKWWRSHGHRG
ARGRQADHRRGAGGLARGQGREHLQARQAAAERRAGGRRAVREAARGGAVARRRRHPGRL
GPGQQVPHEDHQGHLRPRHAAEDQASWPNWRGGSNRPNGRERTAKPRTGEGPRTAYGRTT
RAGGEPDAGHETARTVRRRAAGPQRARGLGRGQPVRITPGPQDQGRPAQRDQTAHGQAHR
PAGGANSGRSTHGARNRPKARTRPLEQLSGVLRMMFAVASVKRAETAFPGLHGAVEVVTR
GRHVEQLSGREHLAVPGDASSNGPHPPPSSPPRAWRRSPEGSRGRT
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 719
Plasmid name pMG1
GenBank accession number NC_006997.1
Genome size 3682 bp
Coordinate of oriT  [Strand] 3539..3570 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Bifidobacterium longum [216816]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU