oriTDB
The information of the oriT region
oriTDB accession number 100256
Name oriT_pCCK381  insolico
Sequence Completeness core
oriT length 89 nt
oriT sequence GGCAGTTTCTTGAAGAGAAACCGGTAAGTGCGCCCTCCCGTAAAATGACGGTCGGGGTTT GCGGTGTCTGTGCTCCGATGATAGCATAA
IR (inverted repeat)[5-10] [16-21] nt  (GTTTCT..AGAAAC)
Location of nic site [32-33] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:5-10;R:16-21;D:32-33
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 327
Name Mob_pCCK381 insolico
GenBank accession number YP_232869
Family MOBQ
Length 703 aa
UniProt ID Q50I79
PDB ID _
Pfam RepB_primase [PF16793.4], Evalue: 6.00E-48, Aligned region: 394..641
MobA_MobL [PF03389.14], Evalue: 4.10E-34, Aligned region: 16..218
Note putative relaxase
Protein sequence [Download] MAIYHLTAKTGSRNGGQSAKAKADYIQREGRYSRDREEVLHTQSGHLPEWAERPADYWDG
ADLYERANGRLFKEIEFALPVELTLDQQRELVDEFARHLTEGERLPYTLAIHAGNGENPH
CHLMISERKNDGIERPADQWFKRYNGKQPERGGAQKSESLKPKAWLEQTREAWSHYANRA
LEQAGHEARIDHRTLEAQGIERLPGIHLGPNVVEMESRGIRTERADIALAIDTANGQIID
LQEYREVIEHERDRQSEEIQRDQRVSGRDRAAGPEHGDTGGRSPAADRRGTAGQRGAGRE
LDEPATASHERMAAGSKGHEGSRRGTGQGRPDGPERRPWLDMEVVGRGLDRFRDAYSGAA
DRIMALAGAANHRATGEHMADFQAQVKGDRTAQAIARQLKAMGCDRYDIGIRDAASGKMM
NREWTPQEVQQNAAWLKRMNAQGNDIYIRPAEQARHGLVLVDDLSSDDLDAMKQEGREPA
AIIETSPKNYQAWVKVAQDAPADHRGVIARKLAREYDADPASADSRHYGRLAGFTNRKDK
YTSRTGYQPWVLCRESSGKSATAGPELMQQAGQVLDSIERRQERTARLAEITAPQSVRRY
RRSVVDDYRSEMAGLVKRYGDDLSKCDFIAAMKLASKGREPDEISKAMAEASPAIMERKA
GHEADYIKRTVQKVMELPQVQEARAELAKQTQKQRSKGPDLSM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 718
Plasmid name pCCK381
GenBank accession number NC_006994.1
Incompatibility group IncQ1
Genome size 10874 bp
Coordinate of oriT  [Strand] 812..900 [-]
Drug resistance experimental resistance to chloramphenicol and florfenicol
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pasteurella multocida 381 [747]
Reference
[1] Kehrenberg C et al (2005) Plasmid-borne florfenicol resistance in Pasteurella multocida. J Antimicrob Chemother. 55(5):773-5. [PMID:15814600]

Microbial Bioinformatics Group in MML, SJTU