oriTDB
The information of the oriT region
oriTDB accession number 100246
Name oriT_pEL60  insolico
Sequence Completeness core
oriT length 106 nt
oriT sequence AGTACGGGACAAGATGTGTTTTTGGAGTACCGCCGACACGCGGCGGCCGTCCAAAAACGT CTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTATCT
IR (inverted repeat)[18-35] [41-58] nt  (GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site
_
Note predicted by the oriTfinder
L:18-35;R:41-58
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 317
Name MobA_pEL60 insolico
GenBank accession number NP_943241
Family MOBP
Length 659 aa
UniProt ID Q6TFV4
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.30E-31, Aligned region: 13..334
Note putative relaxase
Protein sequence [Download] MVIPKIIEGRRDKKSSFGQLIKYMADKPSQELTDTVQPTPETALAVKSDMFEGLNNYLTR
KQKVISTPVNVEPGVQRVVVGDVTCQYNTFSLDGAALEMNSVSQQNTRCKDPVMHYVLSW
PDYEKPNDDQVFDSVKFTLASMGMSDHQYVAAIHRDTDNLHVHVAVNRINPQTYKAASSS
FTKDTLHQACRLLELKNGWSHSNGAYVVNDRQQIVRNPHSKKERGNWRSLDRINKMENKE
GVETLYRYIVGDEQVGGSRQNLIHVSAGLREAKSWDDVHKTFADIGLRVEKAQGKKGYVI
THEHQNQKTAVKASLVFNKAQYTLKSMEERFGEYQPSHIEPAKVSVFKTAYTPGAYRRDA
NKRLQRKIERAEERMLLKGRYRAYRNNLPIYSPDKDRIADEYRKIAQHTRLVKNNVRHSV
SDPHTRKLMYNLAEFKRLQAVANLRLSLREERNGFRAANPRLSYREWVEQEALKGDKAAL
SQMRGFAYSSRKKEKYKQQLVEQIGFNRTFNAITSHDRDDVAVMASARHGVKPRLLKDGT
VIFERDGKPVAADRGHIVLTESNGIDKEKTADLAIALTIAGKAKSVRVDGDGEFKELCCN
RIVDAAVNHNHPVAQGITFTDAAQQAYAQNEKHRLIREQNNSKNEMQFRSESDDKFNPK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 708
Plasmid name pEL60
GenBank accession number NC_005246.1
Incompatibility group IncL/M(pOXA-48)
Genome size 60145 bp
Coordinate of oriT  [Strand] 28663..28768 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Erwinia amylovora LebB66 [552]
Reference
[1] Foster GC et al (2004) Nucleotide sequences, genetic organization, and distribution of pEU30 and pEL60 from Erwinia amylovora. Appl Environ Microbiol. 70(12):7539-44. [PMID:15574957]