oriTDB
The information of the oriT region
oriTDB accession number 100233
Name oriT_pB44  insolico
Sequence Completeness core
oriT length 32 nt
oriT sequence ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)[1-8] [12-19] nt  (ATGCAACC..GGTTGCAT)
Location of nic site [28-29] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:1-8;R:12-19;D:28-29
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 304
Name Mob_pB44 insolico
GenBank accession number YP_001469635
Family MOBQ
Length 566 aa
UniProt ID A7X7J0
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 1.30E-65, Aligned region: 17..254
Note putative relaxase
Protein sequence [Download] MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAP
AEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA
TYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK
TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDETARIDHRSLEDQGSDLEP
TIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTELGRIFDRLGELFAAKIRQLR
QRQARPEPAREPNWRYFEGDARRQLEADRADHTAAIRGKLMGAKADVRNREEWWRSHGTE
EFEAAKQIIDVARAASREARDANVFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPSD
WDQANRFRMRATKAIHDHDMQPRTGLVDELERRLEQAERAEGEKPSPEQVKALALRMAEQ
RERAAEDPTQDMNRPEPSGDEPLDLSEPEDLGEGGPFEERSAPRTKADLLREIRQRADRR
TGQQEAEQRQIDPWQAQPPQRRGHGR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 695
Plasmid name pB44
GenBank accession number NC_004443.1
Genome size 3624 bp
Coordinate of oriT  [Strand] 3480..3511 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Bifidobacterium longum VMKB44 [216816]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU