oriTDB

The information of the oriT region

oriTDB accession number	100193
Name	oriT_pIP823
Sequence Completeness	core
oriT length	41 nt
oriT sequence	CACTTTATGAATATAAAGTATAGTGTGCTATACTTTACATG
IR (inverted repeat)	[2-8] [13-19] nt (ACTTTAT..ATAAAGT)
Location of nic site	[27-28] nt
Conserved sequence flanking the nic site	TAGTGTG\|CTAT
Note	_
	L:2-8;R:13-19;D:27-28

Visualization of oriT structure

Reference

[1] Grohmann E et al (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev. 67(2):277-301. [PMID:12794193]

I. Information of Relaxase

ID	186
Name	Mob_pIP823
GenBank accession number	AAA93296
Family	MOB_V
Length	415 aa
UniProt ID	Q48764
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 9.10E-72, Aligned region: 1..193
Note	relaxase
Protein sequence [Download]	MSFAVVRMQKMKSHDLKGIQFHNQRERESKTNPDIDKTRSHENYDLVNDEPIDYNERVKE IIESQKVGTRKTRKDAVLVNELLVTSDRYFFERLDPDEQKRFFEESYKLFADRYGKQNIA YATVHMDEKTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMQKLGFDLQRGEKG SDREHIEMSKFKKQTLEKEIDLLENELKNKKSELAILSEEVSGEFKIPVKREKKSVEVPT GKRNLLGIEQKKTVMKSTGNVILKDEVFQDLKKKVKAGAVLQTRVDQLLNTDFAKENQSL KKEVKELRSTNKSLSEENSRLKSTVEHLTNEIESLYVLTKDFLKARTSDLESFKELFGVF VGKVKEKAPRGLFVRQHERSEEKKNTFSLQDVLQRDRELREQRKAKRKKSHDLER

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	264	_	_	_	_

N/A

Information of plasmid

ID	186
Plasmid name	pIP823
GenBank accession number	U40997.1
Genome size	>3712 bp
Coordinate of oriT [Strand]	_
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Listeria monocytogenes BM4293 [1639]

Reference
N/A