oriTDB

The information of the oriT region

oriTDB accession number	100191
Name	oriT_pTB53
Sequence Completeness	core
oriT length	38 nt
oriT sequence	CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
IR (inverted repeat)	[2-8] [13-19] nt (ACTTTAT..ATAAAGT)
Location of nic site	[27-28] nt
Conserved sequence flanking the nic site	TAGTGTG\|TTAT
Note	_
	L:2-8;R:13-19;D:27-28

Visualization of oriT structure

Reference

[1] Grohmann E et al (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev. 67(2):277-301. [PMID:12794193]

I. Information of Relaxase

ID	184
Name	Pre_pTB53
GenBank accession number	BAA03580
Family	MOB_V
Length	414 aa
UniProt ID	Q52333
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 1.00E-72, Aligned region: 1..193
Note	relaxase
Protein sequence [Download]	MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKE IIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIA YATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPVHMKKQGFELKRGERG SDRKHIETAKFKKQTLEKEIDLLESELKNKKSELAILSEEVSGEFKIPVKREKKSVEVPT GKRNLLGIEQKKTVMKSTGNVILKDEVFQDLKQKVKAGAVLQTRVDQLLNTDYAKENQSL KKEVKELRSTNKSLSEENGRLKSTVEHLTNEIESLYVLTKDFLKVRTNDLERFKELFGVF VGKVKEKAPRGLFVRHERSEEKKNTFSLQDVLQRDRELREQRKAKRKKSHDLER

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	262	_	_	_	_

N/A

Information of plasmid

ID	184
Plasmid name	pTB53
GenBank accession number	D14852.1
Genome size	> 2083 bp
Coordinate of oriT [Strand]	_
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Bacillus sp. [1409]

Reference
N/A