oriTDB
The information of the oriT region
oriTDB accession number 100172
Name oriT_pSa  insolico
Sequence Completeness intact
oriT length 327 nt
oriT sequence CCTCTCCTGTAGTGTTTCCGTAGTGGTTCAATCCTAGCATTTACAAGGCTTTCCGCCAAT ATTGTAGTAGTCGAACACTACAGCGGTTTTCGTCCTTTGCGTGGAAGTCATTGTAAATCA ATGACTTACGCGCACCGAAAGGTGCGTATTGTCTATAGCCCAGATTTAAGGATACCAACC CTGCTTTTAAGGACGAAAACCATGCCGATAACGCCAGCGTGACCCTAAAGAGGGTCAAAA CTGCTCCCAATGCGCTATGCGCATTGGGTTATCGCGCAACAATGATGCACTTATAATGCT ATGATAGTGCTACGATGATGCAGAAAA
IR (inverted repeat)IR1: [105-112] [120-127] nt  (AAGTCATT..AATGACTT)
IR2: [131-136] [141-146] nt  (CGCACC..GGTGCG)
IR3: [246-255] [259-268] nt  (CCCAATGCGC..GCGCATTGGG)
Location of nic site [154-155] nt
Conserved sequence flanking the
  nic site
TGTCT|ATAGC
Note _
L:105-112;R:120-127;L:131-136;R:141-146;L:246-255;R:259-268;D:154-155
Visualization of oriT structure
Reference
[1] Revilla C et al (2008) Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids. Antimicrob Agents Chemother. 52(4):1472-80. [PMID:18268088]
 N/A
 N/A
Information of plasmid
ID 165
Plasmid name pSa
GenBank accession number EU419764.1
Incompatibility group IncW
Genome size 39 kb
Coordinate of oriT  [Strand] 558..884 [-]
Drug resistance experimental resistance to chloramphenicol, gentamicin, kanamycin, streptomycin, spectinomycin and sulfonamide
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli [562]
Reference
[1] Revilla C et al (2008) Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids. Antimicrob Agents Chemother. 52(4):1472-80. [PMID:18268088]