 oriTDB accession number | 100121 |
| Name | oriT_2s-pEI2  |
Sequence Completeness  | incomplete |
| oriT length | 22 nt |
| oriT sequence | GCACTCTGTGTATGCTGGCTTA |
| IR (inverted repeat) | _ |
| Location of nic site | [18-19] nt |
| Conserved sequence flanking the nic site | CTGG|CTTA |
| Note | ColE1 superfamily |
Visualization of oriT structure Reference| [1] Rogge ML et al (2013) Comparison of Vietnamese and US isolates of Edwardsiella ictaluri. Dis Aquat Organ. 106(1):17-29. [PMID:24062549] |
| ID | 116 |
| Name | MobA_2s-pEI2 |
| GenBank accession number | YP_007459738 |
| Family | MOBP |
| Length | 357 aa |
| UniProt ID | M1L0K9 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 3.70E-06, Aligned region: 1..173 |
| Note | relaxase |
| Protein sequence [Download] | MTSFEKALLPGLDADQYACLWVEHKDKGRLELNFVVPNIELTSGKRLQPYFDRADRPRID AWKTGMNASLSLLDPNDPMKKRELVTPRNLPPIKQEAARVITDSLLRLAELRDDKRSQYV VQSLEHAGFTVCRQTKSSISIADPDGGRNIRLKGMIYEQNFRFGPELRGEIEAASERYRK TSSDRTRDARNVYQRCFRQKRDDNQRRYKRPESSYTGLTVKNMALDGPQPDRHPDSLLRR DLATRRDDHPELADHQRAERHAPAARSQGWENSNEHMRRQETPVREDRSGCRHVWGHPEG RLSVEDTGGVLSDDRARTAAFERIRRIADAARRATQRIQNLINPNLGNGAAFSKQGS |
Reference| [1] Rogge ML et al (2013) Comparison of Vietnamese and US isolates of Edwardsiella ictaluri. Dis Aquat Organ. 106(1):17-29. [PMID:24062549] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 174 | MobC_2s-pEI2 | YP_007459741 | 111 aa | Bacterial mobilization protein (MobC) |
| ID | 116 |
| Plasmid name | 2s-pEI2 |
| GenBank accession number | NC_020295.1 |
| Genome size | 9103 bp |
| Coordinate of oriT [Strand] | 1867..1888 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Edwardsiella ictaluri strain 2s [67780] |
Reference