oriTDB
The information of the oriT region
oriTDB accession number 100059
Name oriT1_pSe-Kan  insolico
Sequence Completeness core
oriT length 58 nt
oriT sequence GTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
IR (inverted repeat)[1-10] [14-23] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [54-55] nt
Conserved sequence flanking the
  nic site
CTGG|CTTA
Note _
L:1-10;R:14-23;D:54-55
Visualization of oriT structure
Reference
[1] Chen CY et al (2011) Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars. Plasmid. 65(3):246-52. [PMID:21324339]
 N/A
 N/A
Information of plasmid
ID 56
Plasmid name pSe-Kan
GenBank accession number NC_015570.1
Genome size 7132 bp
Coordinate of oriT  [Strand] 936..993 [-]; 1522..1790 [-]
Drug resistance insolico kanamycin resistance
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica serovar Typhimurium strain ARS 852 [90371]
Reference
[1] Chen CY et al (2011) Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars. Plasmid. 65(3):246-52. [PMID:21324339]